Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00394 ATGTGTGGGGGTACTATCATTTCTGATTTCATAGACGTGAATTTGAAGAGTGGTCGGAAATTGACCACCCAGGACCTCTGGTCTGAGCTTGACACTTTCTCTGACTTCCTAGCTTTCGACGCCACCTCTTCTTCCAAACACCAACCATCCCAGGACCCAAACCTCCCTCCTTCGCTTCCCAACAACAAAGTGGTGGCATGTGAGAAGGTGAAGAAGAAAAGAGTGGTTGCGGAGAAGGGAACAGGTAGGAGTGGGGGGCGAGTACGGAAGAACGTGTACAGAGGAATAAGGCAAAGGCCATGGGGCAAGTGGGCTGCGGAGATAAGGGACCCAGGCAAGGGTGTGCGTGTCTGGCTCGGTACTTTCAACACTGCAGAAGAAGCCGCTCGCGCTTACGACGACGCTGCCAAGCGCATCCGCGGAGACAAGGCTAAACTCAACTTCCCCAACAAGAAGCCATCATGCCTTAGCCCCGCCCCCGAGTTCACTCAGCCCTGTTATCAACCCACTTTTAACCATGATCACCTGATCTCCAACCTGGAATCGTTCCTTGGTTTGGACCATCAACAGCCACTTGGTGGTCAGTGGGACTCGCTCTACTACGCTGACCTCTGGCTGTGGACACCCAACCCCAACTTGTTCTGA 645 0.5349 MCGGTIISDFIDVNLKSGRKLTTQDLWSELDTFSDFLAFDATSSSKHQPSQDPNLPPSLPNNKVVACEKVKKKRVVAEKGTGRSGGRVRKNVYRGIRQRPWGKWAAEIRDPGKGVRVWLGTFNTAEEAARAYDDAAKRIRGDKAKLNFPNKKPSCLSPAPEFTQPCYQPTFNHDHLISNLESFLGLDHQQPLGGQWDSLYYADLWLWTPNPNLF 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00394 214 PANTHER DNA-BINDING DOMAIN 56 154 IPR044808 GO:0003700|GO:0009873
Pumo4g00394 214 Gene3D AP2/ERF domain 92 151 IPR036955 GO:0003700|GO:0006355
Pumo4g00394 214 PRINTS Ethylene responsive element binding protein signature 115 131 IPR001471 GO:0003700|GO:0006355
Pumo4g00394 214 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Pumo4g00394 214 CDD AP2 93 150 IPR001471 GO:0003700|GO:0006355
Pumo4g00394 214 SMART rav1_2 92 155 IPR001471 GO:0003700|GO:0006355
Pumo4g00394 214 Pfam AP2 domain 92 141 IPR001471 GO:0003700|GO:0006355
Pumo4g00394 214 SUPERFAMILY DNA-binding domain 92 150 IPR016177 GO:0003677
Pumo4g00394 214 FunFam Ethylene-responsive transcription factor 2 91 150 - -
Pumo4g00394 214 ProSiteProfiles AP2/ERF domain profile. 92 149 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00394 Pumo-Chr4 5298434 5300711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00394 1 206 AP2-EREBP Transcription Factor Family AT3G16770 43.798 2.16e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo4g00394 AP2 4.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00394 K09286 - gmx:100527415 214.927