Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00393 ATGAATTCCAACTTCAATTTCGATTTGGATCTCGGAATCGGATCCAACCGTCCCAAATCCCTAAACGACCAGAAAAACCCCAAACCAACTTCCTATTCTTCCTATTCCACCACTTCCTCCTATTCCTCTGCGCAACCCAAGAAACAACCCTCATGGACCCACCAACCCGCTCCCACTCAGACCACCGCCTTGCCCGGTGGGCCCCCCTCCATGGTCGGAGACATCTTCGGCAAGAGCTGGGGAACCACTCAACCTTCTTCCGCTTCCAAAAACATTGGGATCGTTAATAAGAACCCAAACCTTTTTGGAGATTTGGTAAGTTCTGCTTTGGGCCAGGGCTCCAAGACTGCTTCTACCAACGTTCCTCTCAAAAATGCTACTCCCAAGGCGCCCAATAAAACAACCTTTTCAATGGGAAACATGGCTGATTCTTTGCCCAAAACTGCTTCCACGCCACAGAGCAGTGCTACTTGGGCATCATCCTCTGGCAATGGGGGGTTTAGTGTCAATGCCCCCAATCTTGGGGGTCCTTCAATGCGAAACATGGGTACTGGAATTGGAACCAATTCTATTAACAATGATCCGTTTAGTTCTTTATCCGGTATTGGATCCAAGCAATCTGCTACTCTTAATTCAGCTGCTGCTAAAGTACCAAAGGCTGATTTAGGGGACCATGGTTTTGGAGATTTTCAAAATGCTTCCAAACCGAGCCCGGCAGCGTTTCCATCAACTGCTTCTCCCGGAATTGATATCAATTTTACTGGATCTGCTGCTGCTGCTTCTGCTTCCAATCAGACTCCTGTTCAGGGATCAGGTGGTGGTGGTGATCCAATGGACATGTTTTTCACGGCTGCTTCTTCGGCCTCTGATGGATTTGGAGGACAGGATGATTGGGGTTTGGATACTGAGTTTGGTGGGGGAGGCCATGATGTGGGTGGCACCACTACTGACCTTGAAGGGCTGCCTCCTCCTCCTGCTGGGGTGTCAGGTTCCACTGCCAAAGGCAAGGGGATGGACAATTACAAGCAGGGACAGTTTGCTGATGCTATCAAGTGGCTTTCGTGGGCTGTTCTCCTTCTAGAGAAAGCTGGGGATAGTGTGGCCACGGTAGAGGTTTTGTCGTGCAGGGCTTCATGTTACAAAGAAGTTGGGGAGTATAAAAAGGCAGTGGCAGATTGTACAAAGGTTCTTGAAAATGATGAAACCAATGTATCTGTCCTGGTACAGCGTGCTCTCTTGTATGAGAGTATGGAAAAGTACAGACTTGGTGCTGAAGACCTTAGGACTGTGCTGAAGATTGATCCCTGGTAA 1311 0.4882 MNSNFNFDLDLGIGSNRPKSLNDQKNPKPTSYSSYSTTSSYSSAQPKKQPSWTHQPAPTQTTALPGGPPSMVGDIFGKSWGTTQPSSASKNIGIVNKNPNLFGDLVSSALGQGSKTASTNVPLKNATPKAPNKTTFSMGNMADSLPKTASTPQSSATWASSSGNGGFSVNAPNLGGPSMRNMGTGIGTNSINNDPFSSLSGIGSKQSATLNSAAAKVPKADLGDHGFGDFQNASKPSPAAFPSTASPGIDINFTGSAAAASASNQTPVQGSGGGGDPMDMFFTAASSASDGFGGQDDWGLDTEFGGGGHDVGGTTTDLEGLPPPPAGVSGSTAKGKGMDNYKQGQFADAIKWLSWAVLLLEKAGDSVATVEVLSCRASCYKEVGEYKKAVADCTKVLENDETNVSVLVQRALLYESMEKYRLGAEDLRTVLKIDPW 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00393 436 MobiDBLite consensus disorder prediction 226 247 - -
Pumo4g00393 436 MobiDBLite consensus disorder prediction 77 92 - -
Pumo4g00393 436 MobiDBLite consensus disorder prediction 260 280 - -
Pumo4g00393 436 Gene3D Tetratricopeptide repeat domain 330 436 IPR011990 GO:0005515
Pumo4g00393 436 MobiDBLite consensus disorder prediction 114 189 - -
Pumo4g00393 436 MobiDBLite consensus disorder prediction 17 66 - -
Pumo4g00393 436 MobiDBLite consensus disorder prediction 304 334 - -
Pumo4g00393 436 SMART tpr_5 404 435 IPR019734 GO:0005515
Pumo4g00393 436 SMART tpr_5 370 403 IPR019734 GO:0005515
Pumo4g00393 436 SMART tpr_5 330 363 IPR019734 GO:0005515
Pumo4g00393 436 MobiDBLite consensus disorder prediction 1 92 - -
Pumo4g00393 436 SUPERFAMILY TPR-like 334 435 IPR011990 GO:0005515
Pumo4g00393 436 PANTHER OS03G0340700 PROTEIN 5 435 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00393 345 435 Calmodulin-binding Proteins AT3G25230 30.851 4.31e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00393 - - gmx:100799789 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00393 4 5286577 5290591 Pumo4g00393 4 5286577 5290591 ECH