Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00388 ATGGCGACTGGATTCGATAGCGCCCATGAGAAGAAGAAGAAGCTGGCCATTCTGAGCGTGTCTTCCATCCTCCTGGTGGCGATGGTGGCCGCGGTGGCCGTCGGCATAAGAGACAGCACCGAAATCGTTGGCGGCGGTGAGATCGTGAAATCTCAAAGGAACGAGCAAGTGATATGCGAATCCACCGAATACAAAGAAACGTGCCACAAGAGTCTGGCCAAGGCCTCAAACGGAACCACGGACATCAAGCAGCTCATCATAACCGCGTTCAACGCCACAGCCGAAGAGATCGCAAACCAAATCGAGAACTCAACGCTCTACCATGACTTAGCCACCGACCACATGACCAAACAGGCCATGGACATTTGCAAGGAAGTGCTAGGTTACGCTGTGGATGACATTCACCAATCCGTTCAGACATTGGACAAGTTCGACCTAAGCAAGTTGAGCGATTACGCCTACGACCTCAAGGTTTGGATCGCGGGTACTCTTGCTCACCAGCAGACATGTTTGGATGGGTTTGAGAACACCAGCACCGATGCCGGCAAGACCATGGCCAAGGTTCTCAACACGTCTTTGGAGCTCAGCAACAACGCCATGGACATTGTGAACGGTGTGTCGAGTCTCTTCAAGGGTCTTAACTTGAGCTCGTTCACCACCAACAACAGGAAGCTTCTCTCGGAGGTGGATGGGTTCCCTTCGTGGGTGAGTGAAGGGCAGAGGAGGCTTCTTGAGGCTGCGGACCCCAAACCGGACGTGGTTGTGGCTCAGGATGGAAGTGGACAGGTCAAGACAATCCACGAGGCTCTTAAACTGGTGCCTAAAAAGAACAAAAAGCCTTTTGTCATTTACATCAAGGCCGGTATCTACCAGGAGTATGTTAACTTGAACAAGCACTTGACCAATGTCGTCATGATCGGAGATGGCCCCACCAAGACCAGAATCACCGGCAACAAAAACTACGTCGATGGCGTCCAAACTTACAACACCGCAACCGTCGGTGTGAACGCTGCTAACTTCATGGCCAAGAACATTGGGTTCGAGAACACAGCAGGAGCTGAGAAGCACCAAGCCGTGGCCCTGAGGGTAACAGCAGACAAGGCGGTGTTCTACAACTGCAACATGGACGGATACCAGGACACCCTCTACACGCAGTCCCAGCGCCAGTTCTACCGCGACTGCACCGTGACGGGCACCATCGACTTCGTCTTCGGCGACGCCATCGCAGTGTTCCAGAACTGCAAGTTCATCGTGAGGAAGCCCATGTCCAACCAGCAATGCATGGTCACCGCCGGCGGAAGGTCCAAGATCGACAGCCCCAGCGCACTCGTGTTCCAGAGCTGCATCTTCACCGGCGAGCCCGACGTGCTGGCCTTGAACCCCAAAATCTCGTACCTCGGAAGACCATGGAGGGTGTACGCCAAGGTTGTCATCATGGACTCCCAAATCGATGACATCTTCTTGCCGGAAGGGTACATGGCCTGGATGGGAAGTGCTTTCAAGGACACAAGCACCTACTACGAGTTCAACAACAAGGGTCCTGGTGCCAACACTGTTGGTAGAATCACGTGGCCAGGTTTTAAGGTTATTACTTCTGTTGAGGCTGCTGATTACTACCCAGGGAAGTTCTTTGAGATCGCTAATTCGACTCAGCGTGATTCTTGGATCCTCGAGTCTGGGGTGCCCTACTCCCTTGGCCCACTTTCAGCTTAA 1713 0.5324 MATGFDSAHEKKKKLAILSVSSILLVAMVAAVAVGIRDSTEIVGGGEIVKSQRNEQVICESTEYKETCHKSLAKASNGTTDIKQLIITAFNATAEEIANQIENSTLYHDLATDHMTKQAMDICKEVLGYAVDDIHQSVQTLDKFDLSKLSDYAYDLKVWIAGTLAHQQTCLDGFENTSTDAGKTMAKVLNTSLELSNNAMDIVNGVSSLFKGLNLSSFTTNNRKLLSEVDGFPSWVSEGQRRLLEAADPKPDVVVAQDGSGQVKTIHEALKLVPKKNKKPFVIYIKAGIYQEYVNLNKHLTNVVMIGDGPTKTRITGNKNYVDGVQTYNTATVGVNAANFMAKNIGFENTAGAEKHQAVALRVTADKAVFYNCNMDGYQDTLYTQSQRQFYRDCTVTGTIDFVFGDAIAVFQNCKFIVRKPMSNQQCMVTAGGRSKIDSPSALVFQSCIFTGEPDVLALNPKISYLGRPWRVYAKVVIMDSQIDDIFLPEGYMAWMGSAFKDTSTYYEFNNKGPGANTVGRITWPGFKVITSVEAADYYPGKFFEIANSTQRDSWILESGVPYSLGPLSA 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00388 570 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
Pumo4g00388 570 ProSitePatterns Pectinesterase signature 1. 277 296 IPR018040 -
Pumo4g00388 570 Pfam Pectinesterase 252 543 IPR000070 GO:0030599|GO:0042545
Pumo4g00388 570 SUPERFAMILY Pectin lyase-like 249 565 IPR011050 -
Pumo4g00388 570 SMART PMEI_2 50 202 IPR006501 GO:0004857
Pumo4g00388 570 FunFam Pectinesterase 4 249 567 - -
Pumo4g00388 570 NCBIfam pectinesterase inhibitor domain 57 205 IPR006501 GO:0004857
Pumo4g00388 570 CDD PMEI-like_3 58 208 - -
Pumo4g00388 570 PANTHER PECTINESTERASE 20 556 - -
Pumo4g00388 570 Gene3D Invertase/pectin methylesterase inhibitor family protein 54 206 IPR035513 -
Pumo4g00388 570 Gene3D - 250 568 IPR012334 -
Pumo4g00388 570 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 205 IPR035513 -
Pumo4g00388 570 FunFam Pectinesterase 51 207 - -
Pumo4g00388 570 Pfam Plant invertase/pectin methylesterase inhibitor 58 202 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00388 Pumo-Chr4 5241409 5243218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00388 1 569 Carbohydrate Esterase AT3G05610 45.234 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00388 K01051 - gmx:100820068 988.408