Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00352 ATGGCTGTGGGACAGACATTCATAGATGCTGGTGCATTGAGGAAGCATTCTCACATCCATGGAGAGAGAGAATATGTTTGTCAATATGAGGGATGTGGAAAGGGGAGAGGGATTTTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCCCTGGATTTCAACTTAAGGTCTCACATGAAAACACATTCCCAAGAGAACTATCATATCTGCCCATACCCAGATTGTGGAAAGAGATATGCTCACGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAATCAAGTAA 291 0.4261 MAVGQTFIDAGALRKHSHIHGEREYVCQYEGCGKGRGILCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEIK 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00352 96 Gene3D Classic Zinc Finger 36 63 - -
Pumo4g00352 96 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 40 94 - -
Pumo4g00352 96 SMART c2h2final6 68 92 IPR013087 -
Pumo4g00352 96 SMART c2h2final6 38 62 IPR013087 -
Pumo4g00352 96 Pfam Zinc finger, C2H2 type 40 62 IPR013087 -
Pumo4g00352 96 Pfam Zinc finger, C2H2 type 68 92 IPR013087 -
Pumo4g00352 96 ProSitePatterns Zinc finger C2H2 type domain signature. 70 93 IPR013087 -
Pumo4g00352 96 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 67 IPR013087 -
Pumo4g00352 96 Gene3D Classic Zinc Finger 65 96 - -
Pumo4g00352 96 FunFam Zinc finger protein 410 36 63 - -
Pumo4g00352 96 ProSitePatterns Zinc finger C2H2 type domain signature. 40 62 IPR013087 -
Pumo4g00352 96 FunFam zinc finger transcription factor YY1 65 96 - -
Pumo4g00352 96 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 96 IPR013087 -
Pumo4g00352 96 SUPERFAMILY beta-beta-alpha zinc fingers 48 94 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00352 4 94 C2H2 Transcription Factor Family AT4G06634 64.286 1.35e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo4g00352 zf-C2H2 0.0012 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00352 - - qsu:111997563 184.496