Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00347 ATGATTCTCCGTCACCGCCTTCTTCTCTACCTCACCACTCGCTCAAGCACACCAACCCCCAAATGCCCTTTGCCGCACCCCTCTCTGCTCTTCTTCTCAACAACCACCACCACTTCAGATCCCCACTCCTTCACCATATCCTACCTCACCCACACCTGCGGCTTCTCGCGCGAGGCAGCACTAAAAGCATCCAAGCGACTCCGTTTCAGCACCCCCCACAAGCCCGATTCCGTCATCTCCTTCTTCAAAACCCACGGCTTCTCCACCTCCCAGATCCACCGCATCTTCACCCAAGCCCCTGACATCCTCGTATGCGACCCCATCCAGAGGCTTCTCCCCAAATTCCAATTTCTAGCCTCTAAAGGCTCTTCTCCCTCCGACACCCTTCTCATCGTCACCAAGAGCCCCCGTTTCCTCCGTTACAGCCTCAACAACCACATCGCACCCACCTACCAATTGCTCAGAACATTTTGTCCCTCTGATGACAAAGCCCTCTCTGTTCTAATCGCGTGCCCCAATTTCATCGGTGACTCTCGCGTCTCATCCAATATTAACATGTTGCTCGATGCTGGTGTCACGCACTCCGGCATTCGCCATTTGCTTTGCACTAGGCCTTCCATACTCTGCTCCGACTTGAAAAGCGTCGTCGAGGAAGTCAAGTCCATGGGCTTTGACCCTTCCAAATTAAGTTTCGCTGTGGCGTTACTGGCCAAAAGGGCTGTTTCTAAATCCCTCTGGGATGCCAAAGTTGACGCCTTTAAGAGATGGGGTTGGTCTGAAGATGAAGTTTCCGCTGCTTTTAAGAATCAGCCTGGTATCATGTTGCGCTCTACGGAGAAGCTCAATGCAGTGATGGATTTTTGGGTCGGTCGGCTTGGTTGGGATCATTCGGCGCTTATTGCGTCGCCAACGTTGTTTGCGTACAGTTTGGAGAAAAGGGTTGTTCCAAGGGCTTTGGTTGTTCAGCATCTTCTCTCCAAAGGTTTGATCAAGAAAGGTGCTAGCTTGGTTACACCCTTTAGTATGTCTAATGAGGTGTTCCTGGAAAAGTATGTGAGATGTTTCGAGGAGGAAAAATCCAGGCTTCAAGAGCTATATCAGGGACAGGGAACTTGCTAG 1119 0.5121 MILRHRLLLYLTTRSSTPTPKCPLPHPSLLFFSTTTTTSDPHSFTISYLTHTCGFSREAALKASKRLRFSTPHKPDSVISFFKTHGFSTSQIHRIFTQAPDILVCDPIQRLLPKFQFLASKGSSPSDTLLIVTKSPRFLRYSLNNHIAPTYQLLRTFCPSDDKALSVLIACPNFIGDSRVSSNINMLLDAGVTHSGIRHLLCTRPSILCSDLKSVVEEVKSMGFDPSKLSFAVALLAKRAVSKSLWDAKVDAFKRWGWSEDEVSAAFKNQPGIMLRSTEKLNAVMDFWVGRLGWDHSALIASPTLFAYSLEKRVVPRALVVQHLLSKGLIKKGASLVTPFSMSNEVFLEKYVRCFEEEKSRLQELYQGQGTC 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00347 372 PANTHER CGI-12 PROTEIN-RELATED 41 356 IPR003690 GO:0003690|GO:0006355
Pumo4g00347 372 FunFam Mitochondrial transcription termination factor-like 143 359 - -
Pumo4g00347 372 SMART mt_12 296 330 IPR003690 GO:0003690|GO:0006355
Pumo4g00347 372 SMART mt_12 165 193 IPR003690 GO:0003690|GO:0006355
Pumo4g00347 372 SMART mt_12 129 161 IPR003690 GO:0003690|GO:0006355
Pumo4g00347 372 SMART mt_12 264 295 IPR003690 GO:0003690|GO:0006355
Pumo4g00347 372 SMART mt_12 93 124 IPR003690 GO:0003690|GO:0006355
Pumo4g00347 372 SMART mt_12 198 225 IPR003690 GO:0003690|GO:0006355
Pumo4g00347 372 Pfam mTERF 246 348 IPR003690 GO:0003690|GO:0006355
Pumo4g00347 372 Pfam mTERF 79 225 IPR003690 GO:0003690|GO:0006355
Pumo4g00347 372 Gene3D Transcription termination factor 3, mitochondrial 176 363 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00347 Pumo-Chr4 4817908 4819372 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pumo4g00347 mTERF 1.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00347 K15032 - gmx:102666739 361.303