Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00345 ATGTTGAAATTTCACACCCACAACAGTTTCACATTCACAACCCTAAAATGGATTCCTCATGTGCAACGCCAAATACTCAAATTCGAATTCTGCACTGCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCGACCCACGCTCTTTCGTGGTGTCCTACCTCATCAACAACTGTGGCTTCTCCCAAGAAAACGCGCTCAAAGCTTCCCTCAAGCTCCGTTTCCGTGACCCCCAAAAGCTCGATTCAGTTCTCTCCTTCTTCCGAAACCACGGCTTCTCCAATTCTCAAATATCCCATATCCTCCAAAGAGATCACCGGCTACTTTCATGCGACACCCAGAAGGTACTGTTGCCAAAGTTCCAATTTTTACGTTCAAAAGGTGCTTCTTCCTTTGACATTGTTCGCATGCTCACCACTTCCCCTTATTTCCTTACAAGAAGCTTGGACAATCATATAATCCCAACATATGAATTTGTAAGAGGGTTCCTCCAATCTGACAAGCGAATCATTCATCTTCTGATTCACAATCCCAAATTACTTTATGAAGGTACTGTGGCATCTAACGTCAAATTGTTGCTTGATAATGGAGTTACCCACTCAAACATTGCTATGTTGCTCCAGAGACGGAACAATATACTCAGGTCTAGTAACTTGTTGAAGACTGTTGAGGAATTGAAGCAAATGGGTTTCGATCCTTCAACTTCTTCTTTCAGTGTGGCATTGCTTGCCAAAAGGACTGTAAACAAAACCAAATGGGCAGAGAAGATTGACACTTTGAAGAAGTGGGGGTGGTCCCAAGAACAAGTTCTTCTAGCATTTAGGAGGCAGCCTTACTGTATGTTGTCATCCCGTGATAAAATTAACGCAGTGATGAGTTTTTGGGTAGAACAGGTAGGTTTCAATTCTGCGGAGATTGTCAAAGCTCCCGGAATTTTTCTATTGAGTCTCCAGAAGAGGATTGCTCCAAGGGCTTCAGTTGTGCATTTTCTTATCTGTAAAGGTCTGCTACAACAGGATGCAAGCTTAACTACACCGTTTGTTCTGACTGAGAAGTTGTTCCTGGAAAAGTATGTGAAACGTTTTAAAGAGGATTCTTCTCATCTGTTAAAGCTGTACGAGGAAAAAATGAGTCTTCAAAATGACAGGGACAACCCTTGTTCGTAG 1167 0.4327 MLKFHTHNSFTFTTLKWIPHVQRQILKFEFCTATSTSTSTSTSTSDPRSFVVSYLINNCGFSQENALKASLKLRFRDPQKLDSVLSFFRNHGFSNSQISHILQRDHRLLSCDTQKVLLPKFQFLRSKGASSFDIVRMLTTSPYFLTRSLDNHIIPTYEFVRGFLQSDKRIIHLLIHNPKLLYEGTVASNVKLLLDNGVTHSNIAMLLQRRNNILRSSNLLKTVEELKQMGFDPSTSSFSVALLAKRTVNKTKWAEKIDTLKKWGWSQEQVLLAFRRQPYCMLSSRDKINAVMSFWVEQVGFNSAEIVKAPGIFLLSLQKRIAPRASVVHFLICKGLLQQDASLTTPFVLTEKLFLEKYVKRFKEDSSHLLKLYEEKMSLQNDRDNPCS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00345 388 Gene3D Transcription termination factor 3, mitochondrial 166 371 IPR038538 -
Pumo4g00345 388 PANTHER CGI-12 PROTEIN-RELATED 49 363 IPR003690 GO:0003690|GO:0006355
Pumo4g00345 388 FunFam Mitochondrial transcription termination factor-like 149 366 - -
Pumo4g00345 388 Pfam mTERF 249 354 IPR003690 GO:0003690|GO:0006355
Pumo4g00345 388 Pfam mTERF 85 232 IPR003690 GO:0003690|GO:0006355
Pumo4g00345 388 SMART mt_12 99 130 IPR003690 GO:0003690|GO:0006355
Pumo4g00345 388 SMART mt_12 303 337 IPR003690 GO:0003690|GO:0006355
Pumo4g00345 388 SMART mt_12 271 302 IPR003690 GO:0003690|GO:0006355
Pumo4g00345 388 SMART mt_12 204 232 IPR003690 GO:0003690|GO:0006355
Pumo4g00345 388 SMART mt_12 171 199 IPR003690 GO:0003690|GO:0006355
Pumo4g00345 388 SMART mt_12 135 166 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00345 Pumo-Chr4 4812624 4815144 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pumo4g00345 mTERF 7.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00345 K15032 - gmx:102667698 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00345 4 4812624 4815144 Pumo4g00345 4 4812624 4815144 ECH
Pumo4g00345 4 4812624 4815144 Pumo2g01412 2 20966647 20969571 PCT