Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00343 ATGGGCAGTTCCTCTAATGCTGAAAACAGTGGCATCAGGGAACAGGACCGGTTGTTGCCAATAGCCAATGTTGGGAGGATCATGAAGCAGATTCTGCCTCCTAATGCAAAAATCTCGAAGGAATCGAAGGAAACAATGCAAGAGTGCGTGTCAGAGTTCATAAGCTTTGTAACGAGCGAGGCGTCAGAGAAGTGCAGGAAGGAAAGGAGGAAGACTGTGAACGGAGATGACATATGCTGGGCCTTGGGGTCGCTTGGTTTTGATGACTATGCAGAGCCATTGAGAAGGTATTTGCAAAGATATAGAGAATTAGAAGTAGATAGAGCAACTAACCAAGATACAGGAAATAGCCCCCCCAAAAGAGAAGGATCATGA 375 0.4587 MGSSSNAENSGIREQDRLLPIANVGRIMKQILPPNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGSLGFDDYAEPLRRYLQRYRELEVDRATNQDTGNSPPKREGS 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00343 124 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 6 110 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pumo4g00343 124 FunFam Nuclear transcription factor Y subunit B-3 7 124 - -
Pumo4g00343 124 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 18 82 IPR003958 -
Pumo4g00343 124 PRINTS CCAAT-binding transcription factor subunit A signature 84 102 - -
Pumo4g00343 124 PRINTS CCAAT-binding transcription factor subunit A signature 65 83 - -
Pumo4g00343 124 PRINTS CCAAT-binding transcription factor subunit A signature 46 64 - -
Pumo4g00343 124 Gene3D Histone, subunit A 5 123 IPR009072 GO:0046982
Pumo4g00343 124 MobiDBLite consensus disorder prediction 105 124 - -
Pumo4g00343 124 SUPERFAMILY Histone-fold 15 112 IPR009072 GO:0046982
Pumo4g00343 124 MobiDBLite consensus disorder prediction 110 124 - -
Pumo4g00343 124 ProSitePatterns NF-YB/HAP3 subunit signature. 49 65 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00343 Pumo-Chr4 4804645 4805019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00343 12 115 CCAAT-HAP3 Transcription Factor Family AT2G47810 73.077 1.00e-56 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pumo4g00343 CBFD_NFYB_HMF 3.6e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00343 K08065 - gmx:100786046 217.238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00343 4 4804645 4805019 Pumo2g01417 2 20997108 20997696 PCT