Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00335 ATGGAGCGGTACGGCCGGGGCAGCGAAGGGTCGCAGTCTGATCCGTCGCCAGAATGGACCGTGGCCGCCGGCGCCGACGCCGACGCCGGCCTCGAAGAGTCCTCGTGGCAACTCGGATTACCCGCTGCCGAATCGTACCCTCTGCGTCCCGATGAGGCCGATTGTATCTACTATTTGAGAACGGGTCTTTGCGGTTACGGCACACGCTGTCGTTTCAACCATCCTCGTGACCGTGCCGCGGTTATTGGAGCTGCGGCGAGGACTGGAGGGGATTTTCCCGAGCGCGTGGGACAGCCTGTGTGCCAGTACTATATGAGGACAGGATCGTGCAAATTTGGTGCGTCCTGCAAGTACCACCATCCTAGGCAGGCAGCAGGCACTGCTACCCCTGTGCCACTAAATTATTATGGATACCCATTGCGAGTGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACTGGACAGTGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCACAGCCTGCGGGCATCCAAGTTCTAGCACCATCACCAGTTCCCCCAGTTTCGCCTCTGCCTGTACCTGTACCTTCACCAATATATCCAACTGTACAGCCCCCATCTGGTCCTTCGCAACAACAATATGGTGTGCTTGTTGCAAGGCCACCTATGCTACCTGGCTCAGTAGTCCAGGGTCCCTATGGGCCTATGGTAGTGTCCCCTGCCATGGTCCCTTTTTCAGGCTGGAGTCCTTATCAGGCTCCTGCCACAAACCCTGTACTTCCATCTAGCACTACGTCTAATGTTGGTTCAACACAGCTTTATGGGATAACCCAGCTGCCTTCATCGGCAGCTACTTATACTGGACCTTATCAACCTTCTGGTTCCTCAATTGGTCCTTCAGGTGCCAGTCAGAAGGAGCATCCATTTCCAGAAAGGCCTGATCAACCAGAATGTCATTATTACATGAAAACAGGGGAGTGTAAATTTGGTCCATCGTGTAGATATCATCATCCACCAGACAAGAGTGCACCAAAAACAAATGTAAACCTTAGTCCCGTGGGTCTTCCTTTGCGTCCGGGGGCACCACCTTGCACTCATTATACCCAGCGTGGAGTTTGCAAGTTTGGTTCTGCATGCAAATTCGATCATCCTATGGGATCACTGAGTTATAGTCCATCTGCCTCTTCCCTAGCTGATATGCCAGTTGCACCCTATCCTGTGGGTTCCTCAATTGGTACTCTTGCCCCGTCATCTTCGTCATCGGAGTTGCGGCCTGAACTTGGTGCAGGATCCAACAAGGAGTCTGTTTCATCCAGAATGTCTTCAATGAGCACATCGACTGGATCAGTTGGCTTGACCTTGTCAAGCGTTGGACCCATTTCTCACTCAAGCACCCAACCATCTGCTGAGAGTTCCATTTCTCCGGCAACTACCAGTGCTACCACAAGTAGCACTGTCTCTCACACCTCAAGCTAA 1461 0.5216 MERYGRGSEGSQSDPSPEWTVAAGADADAGLEESSWQLGLPAAESYPLRPDEADCIYYLRTGLCGYGTRCRFNHPRDRAAVIGAAARTGGDFPERVGQPVCQYYMRTGSCKFGASCKYHHPRQAAGTATPVPLNYYGYPLRVGEKECSYYVKTGQCKFGATCKFHHPQPAGIQVLAPSPVPPVSPLPVPVPSPIYPTVQPPSGPSQQQYGVLVARPPMLPGSVVQGPYGPMVVSPAMVPFSGWSPYQAPATNPVLPSSTTSNVGSTQLYGITQLPSSAATYTGPYQPSGSSIGPSGASQKEHPFPERPDQPECHYYMKTGECKFGPSCRYHHPPDKSAPKTNVNLSPVGLPLRPGAPPCTHYTQRGVCKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELGAGSNKESVSSRMSSMSTSTGSVGLTLSSVGPISHSSTQPSAESSISPATTSATTSSTVSHTSS 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00335 486 ProSiteProfiles Zinc finger C3H1-type profile. 49 77 IPR000571 GO:0046872
Pumo4g00335 486 SUPERFAMILY CCCH zinc finger 357 383 IPR036855 GO:0046872
Pumo4g00335 486 MobiDBLite consensus disorder prediction 280 310 - -
Pumo4g00335 486 SUPERFAMILY CCCH zinc finger 142 169 IPR036855 GO:0046872
Pumo4g00335 486 ProSiteProfiles Zinc finger C3H1-type profile. 307 335 IPR000571 GO:0046872
Pumo4g00335 486 PANTHER PROTEIN PHOSPHATASE RELATED 43 415 - -
Pumo4g00335 486 Gene3D - 306 383 - -
Pumo4g00335 486 SUPERFAMILY CCCH zinc finger 98 123 IPR036855 GO:0046872
Pumo4g00335 486 ProSiteProfiles Zinc finger C3H1-type profile. 95 123 IPR000571 GO:0046872
Pumo4g00335 486 SUPERFAMILY CCCH zinc finger 52 78 IPR036855 GO:0046872
Pumo4g00335 486 Gene3D - 129 178 - -
Pumo4g00335 486 FunFam CCCH type zinc finger protein 305 390 - -
Pumo4g00335 486 ProSiteProfiles Zinc finger C3H1-type profile. 353 381 IPR000571 GO:0046872
Pumo4g00335 486 MobiDBLite consensus disorder prediction 1 23 - -
Pumo4g00335 486 MobiDBLite consensus disorder prediction 409 486 - -
Pumo4g00335 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 356 380 IPR000571 GO:0046872
Pumo4g00335 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 98 122 IPR000571 GO:0046872
Pumo4g00335 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 309 334 IPR000571 GO:0046872
Pumo4g00335 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 51 76 IPR000571 GO:0046872
Pumo4g00335 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 144 168 IPR000571 GO:0046872
Pumo4g00335 486 Gene3D - 49 128 - -
Pumo4g00335 486 MobiDBLite consensus disorder prediction 280 297 - -
Pumo4g00335 486 FunFam Zinc finger nuclease 2 48 126 - -
Pumo4g00335 486 ProSiteProfiles Zinc finger C3H1-type profile. 141 169 IPR000571 GO:0046872
Pumo4g00335 486 SMART c3hfinal6 353 380 IPR000571 GO:0046872
Pumo4g00335 486 SMART c3hfinal6 307 334 IPR000571 GO:0046872
Pumo4g00335 486 SMART c3hfinal6 49 76 IPR000571 GO:0046872
Pumo4g00335 486 SMART c3hfinal6 95 122 IPR000571 GO:0046872
Pumo4g00335 486 SMART c3hfinal6 143 168 IPR000571 GO:0046872
Pumo4g00335 486 SUPERFAMILY CCCH zinc finger 310 336 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00335 Pumo-Chr4 4708676 4714045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00335 1 452 C2H2 Transcription Factor Family AT5G18550 54.624 6.72e-154 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo4g00335 zf-CCCH 1.6e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00335 - - gmx:100789405 831.247
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00335 4 4708676 4714045 Pumo2g00548 2 8807430 8815533 PCT