Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00334 ATGTCAACCTCTAGAACATCAGATACAACCTTCAAAGGATATGACCCCAACCAAACTCAAATGTGTCTCTCTCTCCTCCAACGCAACACATCTCCTTGTGGTGAGAGAAGAGGCAGAAGGAAGCAAGCTGAACCAGGGAGGTTCCTTGGTGTGAGGAGGCGCCCTTGGGGTCGATATGCTGCTGAAATTAGAGACCCCACAACCAAAGAGAGGCATTGGCTTGGCACATTTGACACTGCTCAAGAAGCAGCTCTTGCTTATGACAGAGCTGCTCTGTCCATGAAAGGAAGCCAAGCAAGAACCAACTTTGTTTACTCTGACAACATCAACTTCCACACTCTCCTTTCTCCTATGGATGTTCAAGCTCAAGTTCAACCTCTCTTGCCAGCTTCACAGTTCCTCACTAACACCACTCAGACCAAACAACCAACCAACAAAAATAGCCTCTCTCAGGTTATTCACACTTCAAACAGTGGAAACCCCTCCCCATTGAACAATGACATGTGTGTTGAAACCACATATGGATCAGCTCAGGATGATAATTTCTTCTTTTCCAGTGATTCTAACTCAGGCTATCTGGAATGCATAGTTCCTGATAATTGTTTCAGACCTGCTTCGTCCAGTTCAAACTCCAGAAAGAGCAATGTGAGTGATCAAAAGGCTAACACAAACTCCATGGAGAGTACTAATCATCATCAGTACTCACATGTTGACATGACTTCATTCTCTCAAGAAGGCATAGAAATGGCACCAAGGGCCTCTAACTTTTCAGATTTTTGTTATCAAAGTGAAGTGAGTCAAGGATCATGGGATGATCAGCAATCATGGGATTGGAATTGCAGTGAACTTTCAGCTATATTTAAGAACCCAATAAGGGTGGAAAATGGGTGCATGGATGCATTGTACCCCATTAATGATAGTCCTAGTCCAAGCTATGGGCTAATGAATCAGGCTGCTGCTTCTTCTACTACCTGTTCTCCATCACTTCCACCCTTTGGGGACGTAGACTTGGGATACCCACTCTTCTGA 1029 0.4441 MSTSRTSDTTFKGYDPNQTQMCLSLLQRNTSPCGERRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGSQARTNFVYSDNINFHTLLSPMDVQAQVQPLLPASQFLTNTTQTKQPTNKNSLSQVIHTSNSGNPSPLNNDMCVETTYGSAQDDNFFFSSDSNSGYLECIVPDNCFRPASSSSNSRKSNVSDQKANTNSMESTNHHQYSHVDMTSFSQEGIEMAPRASNFSDFCYQSEVSQGSWDDQQSWDWNCSELSAIFKNPIRVENGCMDALYPINDSPSPSYGLMNQAAASSTTCSPSLPPFGDVDLGYPLF 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00334 342 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Pumo4g00334 342 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Pumo4g00334 342 FunFam Ethylene-responsive transcription factor 2 47 105 - -
Pumo4g00334 342 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Pumo4g00334 342 Pfam AP2 domain 50 96 IPR001471 GO:0003700|GO:0006355
Pumo4g00334 342 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 35 241 - -
Pumo4g00334 342 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Pumo4g00334 342 MobiDBLite consensus disorder prediction 205 231 - -
Pumo4g00334 342 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Pumo4g00334 342 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Pumo4g00334 342 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00334 Pumo-Chr4 4705024 4706052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00334 1 241 AP2-EREBP Transcription Factor Family AT5G18560 42.157 3.16e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo4g00334 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00334 - - gmx:100812047 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00334 4 4705024 4706052 Pumo2g00547 2 8804658 8805692 PCT