Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00328 ATGGGGAGGCCCTCCAAGACGCAGGTTTCGAACGACTCATCCTCCGAGGAGGAGGACGATGCGGCCGCCGCCGCCAACAATCAGATCGAAGACGACGACGAGGAGCTCGAAGCGGTGGCTCGCTCCGCAACCGACGACGACGACGATAATTCGCCGGACGAAGCTGCCGAAGACGACGACGAGGACAAACAGGATGAGAGTAATGCTGATCCTGAAGTTAGCAAGCGTGAGAAGGCCAGATTGAGAGAAATGCAACAACTGAAGAAACAGAAGATTCAGGAGATATTGGATGCACAAAATGCGACCATTGATGCTGATATGGATAATAGAGGAAAGGGCCGATTGAAGTATCTCCTACAGCAAACTGAGCTGTTTGCTCATTTTGCCAAGGGTGACCAATCTTCTCAAAAGAAGGCAAAGGGAAGGGGTCGCCATGCATCAAAAGTAACTGAAGAAGAGGAAGATGAACAATACCTTAAAGGGGAAGAAGATGGCTTAGCAAATACACGGCTGGTGACTCAACCGTCATGTATCCAAGGGAAGATGAGGGATTACCAACTTGCTGGGCTAAACTGGCTCATACGATTGTATGAGAATGGCATAAATGGTATTCTGGCAGATGAAATGGGGCTTGGCAAAACCTTACAAACAATATCTTTGTTAGGCTACTTACATGAGTTCAGAGGAATAACAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTCGGCGCTTTTGCCCTGTTTTGCGTGCTATAAAGTTCCTTGGCAATCCTGACGAAAGGAAGCATATAAGAGAGGAGTTACTCGTTGCTGGTAAGTTTGATGTGTGTGTTACAAGTTTTGAAATGGTAATCAAGGAGAAGTCTGCTTTACGGCGATTTAGTTGGCGCTACATTATTATTGATGAGGCCCATCGAATCAAGAATGAGAACTCACTCCTGTCCAAAACAATGAGGCTATATAATACAAACTATCGACTACTCATAACTGGCACACCATTACAGAACAATCTTCATGAACTTTGGGCTCTTCTCAATTTTCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGATGAACATGAGGTTGTTCAACAACTACACAAGGTCCTCCGTCCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGGTTGCCACCAAAAAAGGAAACCATTCTCAAAGTAGGCATGTCGCAAATGCAGAAGCAGTATTATAAGGCATTACTGCAGAAGGATCTGGAGGTTGTAAATGCAGGTGGAGAACGGAAACGTCTCTTAAATATAGCAATGCAGCTACGCAAATGTTGTAATCACCCATATCTCTTCCAAGGTGCTGAACCTGGTCCTCCCTTTACAACAGGAGACCATCTCATTACAAATGCCGGCAAAATGGTTCTACTGGATAAGTTACTTCCTAAACTAAAAGAGCGTGATTCTAGGGTTCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATCTCATGTTTCGTGGATACCTATATTGTCGCATAGATGGCAATACTGGTGGAGAAGATCGTGATGCTTCCATTGAGGCTTTCAACAAACCAGGAAGTGAAAAATTTGTCTTCTTGTTATCTACTCGGGCTGGAGGCCTTGGCATTAATCTTGCTACTGCTGATGTTGTCATTCTTTATGACAGTGACTGGAACCCACAAGTTGACCTGCAAGCTCAAGATCGTGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTCCGATTTTGCACTGAGTATACGATCGAGGAAAAAGTCATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAAGGGCGATTAGCTGAACAGAAGACTGTTAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGTACAATTACAGATGAGGATATTGACAGAATTATCGCTAAAGGAGAGGAAGCAACAGCTGAGCTTGACGCTAAGATGAAAAAATTTACTGAAGATGCTATCAAATTTAAGATGGACGACAAGTCTGAATACTTCAAGCAAACAATGCGCCAAGGTGGTCCTACTAAGCCAAAAGAGCCTCGTATTCCTAGGATGCCTCAATTGCATGATTTCCAGTTTTTCAACACACAAAGGCTGAGTGAGCTGTTTGAAAAGGAAGTTCGCTACCTCATGCAAACACATCAGAAGAATCAGGTGAAAGACTCCATAGATGTTGATGAACCAGAAGAGGTGGGAGATCCTTTGACTGCTGAAGAGTTAGAAGAAAAGGAGCAGTTGCTAGAGCAGGGATTTTCATCATGGAGCCGGAAGGATTTTAATGCTTTCATTAGGGCCTGTGAAAAGTATGGCCGAAATGATATAAAAGGTATTGCTTCTGAGATGGAAGGAAAAACACAAGAGGAAGTTGAAAGATATGCAAAAGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATTATTAAAAACATTGAAAGAGGGGAGGCGAGAATATCCCGGAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAGGAATCCTTGGCTAGAATTGAAGATACAATATGGACAAAACAAAGGGAAGTTATATAATGAAGAATGTGATCGATTCATGATATGTATGATTCACAAACTTGGCTATGGTAATTGGGATGAGTTGAAGGCAGCTTTTCGAATGTCGCCCTTGTTTCGATTTGATTGGTTTGTTAAGTCTCGCACAACACAGGAAATTACAAGGAGGTGTGACACCCTCATTCGGCTGGTAGAGAAGGAAAATCAAGAATATGATGAGAGGGAGAGGCAAGCTCGTAAAGAGAAGAAACTTGCGGCCAAGAGCATGACCCCATCGAAGCGTTCCATGCCTAGACAGACTGAGAGTCCATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGGGCAAGAAGAAAAAATAA 3057 0.4249 MGRPSKTQVSNDSSSEEEDDAAAAANNQIEDDDEELEAVARSATDDDDDNSPDEAAEDDDEDKQDESNADPEVSKREKARLREMQQLKKQKIQEILDAQNATIDADMDNRGKGRLKYLLQQTELFAHFAKGDQSSQKKAKGRGRHASKVTEEEEDEQYLKGEEDGLANTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERKHIREELLVAGKFDVCVTSFEMVIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDEHEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPFTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYLYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDKSEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELFEKEVRYLMQTHQKNQVKDSIDVDEPEEVGDPLTAEELEEKEQLLEQGFSSWSRKDFNAFIRACEKYGRNDIKGIASEMEGKTQEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYRNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQEITRRCDTLIRLVEKENQEYDERERQARKEKKLAAKSMTPSKRSMPRQTESPSLKKRKQLTMDDYLSSGKKKK 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00328 1018 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 88 1002 - -
Pumo4g00328 1018 FunFam ISWI chromatin-remodeling complex ATPase CHR11 882 986 - -
Pumo4g00328 1018 Gene3D - 882 985 - -
Pumo4g00328 1018 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 707 796 IPR036306 GO:0003677|GO:0006338|GO:0031491
Pumo4g00328 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 397 IPR027417 -
Pumo4g00328 1018 MobiDBLite consensus disorder prediction 994 1018 - -
Pumo4g00328 1018 ProSiteProfiles SANT domain profile. 793 845 IPR017884 -
Pumo4g00328 1018 MobiDBLite consensus disorder prediction 965 1018 - -
Pumo4g00328 1018 MobiDBLite consensus disorder prediction 14 67 - -
Pumo4g00328 1018 CDD SANT 797 841 IPR001005 -
Pumo4g00328 1018 FunFam Chromatin-remodeling complex ATPase 183 398 - -
Pumo4g00328 1018 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 194 359 IPR014001 -
Pumo4g00328 1018 MobiDBLite consensus disorder prediction 965 982 - -
Pumo4g00328 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 399 680 IPR027417 -
Pumo4g00328 1018 FunFam ISWI chromatin-remodeling complex ATPase CHR11 699 793 - -
Pumo4g00328 1018 Pfam SNF2-related domain 195 462 IPR000330 GO:0005524|GO:0140658
Pumo4g00328 1018 Pfam Helicase conserved C-terminal domain 485 597 IPR001650 -
Pumo4g00328 1018 Gene3D - 183 398 IPR038718 -
Pumo4g00328 1018 Gene3D iswi atpase 849 881 - -
Pumo4g00328 1018 SMART sant 794 843 IPR001005 -
Pumo4g00328 1018 SMART sant 896 957 IPR001005 -
Pumo4g00328 1018 CDD SF2_C_SNF 483 608 - -
Pumo4g00328 1018 CDD DEXHc_SMARCA1_SMARCA5 179 399 IPR044754 GO:0005524
Pumo4g00328 1018 Pfam SLIDE 851 961 IPR015195 GO:0003677|GO:0005634|GO:0006338
Pumo4g00328 1018 Gene3D ISWI, HAND domain 697 793 IPR036306 GO:0003677|GO:0006338|GO:0031491
Pumo4g00328 1018 SUPERFAMILY Homeodomain-like 849 971 IPR009057 -
Pumo4g00328 1018 Pfam HAND 707 789 IPR015194 GO:0003677|GO:0006338|GO:0031491
Pumo4g00328 1018 SMART ultradead3 178 370 IPR014001 -
Pumo4g00328 1018 MobiDBLite consensus disorder prediction 133 155 - -
Pumo4g00328 1018 SUPERFAMILY Homeodomain-like 797 847 IPR009057 -
Pumo4g00328 1018 Coils Coil 951 978 - -
Pumo4g00328 1018 Coils Coil 74 101 - -
Pumo4g00328 1018 Gene3D - 794 848 - -
Pumo4g00328 1018 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 487 638 IPR001650 -
Pumo4g00328 1018 MobiDBLite consensus disorder prediction 1 80 - -
Pumo4g00328 1018 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 794 848 - -
Pumo4g00328 1018 Gene3D - 403 695 IPR027417 -
Pumo4g00328 1018 MobiDBLite consensus disorder prediction 130 158 - -
Pumo4g00328 1018 FunFam ISWI chromatin-remodeling complex ATPase CHR11 403 695 - -
Pumo4g00328 1018 SMART helicmild6 513 597 IPR001650 -
Pumo4g00328 1018 Coils Coil 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00328 Pumo-Chr4 4641904 4651428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00328 203 624 RAD5 or RAD16-like Gene Family AT1G02670 27.921 3.26e-42 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo4g00328 SNF2_N 2.4e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00328 K11654 - gmx:100791510 1897.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00328 4 4641904 4651428 Pumo4g00328 4 4641904 4651428 ECH
Pumo4g00328 4 4641904 4651428 Pumo2g00524 2 8267880 8276488 PCT