Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00324 ATGATCAAGATGCAAGGGCACATTGAAACTGACTCTACCAAGCCACCACTCTCTCAAATCCCACCTTCTTCTTCTTCTTCTCTTCACCCTTCAACCATTGCTGAAACGGGTAACACCACCCCCAGAAAGCGTGTTAAAAAAGTGGACCACACCAATTGCGAGGGCCTCAACATGGAACGTGAAAGAAGGTCGAAGATGACTCAGATGTTCACTCAGCTTCGAACCACTGTCCCTGGTGTCTTACCTCAGGCTACAAGGGAAGTGATTATAAACGAGACAATTAAGTACATTAAGGAGCTTGAGAAGAAGAAGCAAAGATTGGAGGAGTTGAAGGAGTCAATGAAATTAGGAATAGAAGGGTCGATGCTTGCATGTGGTAACATTAACAACAATAACATGAATTGCTCCATCACGGTTACTGTCTCTGCTAATGTTGCATTCTTTGGTATTCAATCCCTGCCTCGACCCGGTTTGACCACAGTAATTTTGAAGGTGTTCTGCAAGCACCGAGCCGAGATTTTGTCTGCAAATGTCTCGGTTAATGATGGGAAATTGATATTGGCAATCACGGCCATGGTGCAAAATGGTGGTGATGGGAACAGTGTCATCGAAAATATTAAAAGAGAAATTATGAGTTTGTAG 642 0.4346 MIKMQGHIETDSTKPPLSQIPPSSSSSLHPSTIAETGNTTPRKRVKKVDHTNCEGLNMERERRSKMTQMFTQLRTTVPGVLPQATREVIINETIKYIKELEKKKQRLEELKESMKLGIEGSMLACGNINNNNMNCSITVTVSANVAFFGIQSLPRPGLTTVILKVFCKHRAEILSANVSVNDGKLILAITAMVQNGGDGNSVIENIKREIMSL 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00324 213 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 50 100 IPR011598 GO:0046983
Pumo4g00324 213 Pfam Helix-loop-helix DNA-binding domain 58 101 IPR011598 GO:0046983
Pumo4g00324 213 Gene3D - 36 123 IPR036638 GO:0046983
Pumo4g00324 213 Coils Coil 90 117 - -
Pumo4g00324 213 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 41 202 IPR044278 GO:0003700|GO:0006355|GO:0009960
Pumo4g00324 213 SMART finulus 56 106 IPR011598 GO:0046983
Pumo4g00324 213 MobiDBLite consensus disorder prediction 11 39 - -
Pumo4g00324 213 MobiDBLite consensus disorder prediction 1 45 - -
Pumo4g00324 213 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 57 120 IPR036638 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00324 35 180 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 26.174 1.11e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo4g00324 HLH 6.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00324 - - gmx:102670256 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00324 4 4614175 4614995 Pumo4g00324 4 4614175 4614995 ECH