Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00320 ATGGGGTGTGTGTTTGGGAAAGAAGCATCAAAGAGGAAAGAGCAAGTGGAAGTTGCAAGAGCAGAAGAGGGTGTGGTTCAGAACGGTGGGAATGTGAAGGAAGGTGGAGAAGAGGAGAAGAGCAAGCGCCCAAAAGGGGAGAGAAGGCGATCTTCGAAGCCGAATCCAAGGTTGAGCAATCCACCTAACCATGTACATGGTGAGCAAGTAGCTGCAGGGTGGCCCTCTTGGCTCTCCAAGGTTGCTGGGGAAGCTATTAATGGATTGGTCCCCAGAAGAGCTGACACTTTTGAGAAGCTTAATAAGGTTGGACAAGGTACATATAGCAATGTTTACAAAGCAAAGGATACTTTGACAGGGAACATCGTTGCCCTAAAGAAGGTCCGCTTTGACAATTTAGAGCCCGAGAGTGTGAAATTCATGGCCAGAGAGATTCTTATTCTTCGCCATCTGGATCATCCCAATGTTGTCAAACTGGAAGGTTTAGTGACTTCAAGGATGTCTTGCAGTTTGTACCTTGTGTTTGAATACATGGATCATGATTTGGCTGGACTTGCTACAAGCCCCACAATCAAGTTCACAGAGTCTCAGGTTAAATGTTACATGCATCAGCTACTTTCTGGATTGGAACACTGTCACAACCGTCATGTGCTGCATCGTGATATAAAGGGGTCAAACCTTCTTATTGACAGTGAAGGAGTTCTTCGGATTGCTGATTTTGGATTAGCTTCCTTCTTTGATCCTAATCACAAGCACCCTATGACCAGCAGGGTGGTTACTTTATGGTATCGACCTCCAGAACTTCTCCTTGGAGCCACTGATTATGGTGTAGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAATTGTTGGCTGGCAAGCCTATTATGCCTGGTCGAACCGAGGTGGAGCAGCTACATAAGATATTTAAGCTTTGTGGTTCTCCTTCTGATGAATATTGGAAAAAATTGAAGTTGCCACATGCTACCATTTTTAAGCCCCGACAATCATACAAGCGGTGCATTGCAGAGACATTTAAGAATTTCCCAGCATCATCCCTGCCACTAATTGAGACCCTTCTCGCAATTGATCCAACTGAACGTCAAACTGCCACAGCTGCATTGCATAGTGAATTCTTTACAACAAAACCTTATGCCTGTGAACCCTCTAGCCTTCCAAAATATCCTCCCAGCAAGGAGATGGATACAAAGCTACGGGATGAAGAAGCTAGAAGATTGAGAGTTGCTAGCAAAGCTAATGCTGCTGGTGTCAAGAAATCACGTCCACGTGATCGAGGTGGAAGGGGAATTCCAGTTCCAGATTCAAATGCTGAGTTGCAAGCAAATATTGATAGATGGCGACTGGTAACACATGCAAATGCTAAGAGCAAGAGTGAGAAGTTTCCTCCTCCTCATGAAGATGGAACTCTAGGCTATCCTTTGGGTTCTTCACATCACATGGATCCAATTTTCGATCCTCCCGATGTTCCATTTAGTTCCACAAACTTGTCATATCCTAAAGCAAATTTCCAGACCTGGTCTGGCCCATTGGTGGAACCTAGTGTGGATGCACCAAGGAGAAAGAAGAACATGGCAGGGAATGGGCACACACAATCAAAGAAGGACTCTTATAGATAG 1641 0.4528 MGCVFGKEASKRKEQVEVARAEEGVVQNGGNVKEGGEEEKSKRPKGERRRSSKPNPRLSNPPNHVHGEQVAAGWPSWLSKVAGEAINGLVPRRADTFEKLNKVGQGTYSNVYKAKDTLTGNIVALKKVRFDNLEPESVKFMAREILILRHLDHPNVVKLEGLVTSRMSCSLYLVFEYMDHDLAGLATSPTIKFTESQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDSEGVLRIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSDEYWKKLKLPHATIFKPRQSYKRCIAETFKNFPASSLPLIETLLAIDPTERQTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDTKLRDEEARRLRVASKANAAGVKKSRPRDRGGRGIPVPDSNAELQANIDRWRLVTHANAKSKSEKFPPPHEDGTLGYPLGSSHHMDPIFDPPDVPFSSTNLSYPKANFQTWSGPLVEPSVDAPRRKKNMAGNGHTQSKKDSYR 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00320 546 SMART serkin_6 97 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00320 546 MobiDBLite consensus disorder prediction 1 68 - -
Pumo4g00320 546 MobiDBLite consensus disorder prediction 416 446 - -
Pumo4g00320 546 PANTHER CELL DIVISION PROTEIN KINASE 95 385 - -
Pumo4g00320 546 FunFam probable serine/threonine-protein kinase At1g54610 84 179 - -
Pumo4g00320 546 ProSiteProfiles Protein kinase domain profile. 97 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00320 546 MobiDBLite consensus disorder prediction 498 517 - -
Pumo4g00320 546 Gene3D Phosphorylase Kinase; domain 1 85 179 - -
Pumo4g00320 546 Pfam Protein kinase domain 97 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00320 546 SUPERFAMILY Protein kinase-like (PK-like) 92 386 IPR011009 -
Pumo4g00320 546 CDD STKc_CDK9_like 97 381 - -
Pumo4g00320 546 MobiDBLite consensus disorder prediction 462 546 - -
Pumo4g00320 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Pumo4g00320 546 ProSitePatterns Protein kinases ATP-binding region signature. 103 126 IPR017441 GO:0005524
Pumo4g00320 546 FunFam probable serine/threonine-protein kinase At1g54610 180 421 - -
Pumo4g00320 546 Gene3D Transferase(Phosphotransferase) domain 1 180 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00320 Pumo-Chr4 4566550 4571866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00320 92 419 Core Cell Cycle Gene Families AT5G10270 51.453 2.67e-116 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pumo4g00320 Pkinase 3.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00320 K08819 - gmx:100791757 1051.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00320 4 4566550 4571866 Pumo2g00490 2 7926309 7932439 PCT