Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00317 ATGGATGGGTTGGAGCAGAGTTGGTGGGCCAATATGCCTCACGAGCTTCTCATAGAGGTCCTCCTCCGAATTGAGTCGTCGGAGGCCACGTGGCCGCAGCGGAGGAGCGTGGTGGCTTGTGCCGGAGTGTGCCGCACCTGGAGGCTCATCATCAAGGAGTTAGTCAAGCCACCTCAACTCTCTTCCAACATAACCTTCCCCATCTCTCTCAAACAGCCTGGCCCAAGGGAACATCTACTTCAGTGCTTCATTAGGCGTAACAGTGGCACACAGACATATTATCTGTTTCGCAGTTTATCTAGTGCACTAGCTGATGATGGGAAGTTCCTTCTGGCTGCACGCAAGTTCAGACGCCCTACCTGCACAGATTATATTATCTCCCTGGATGCAGATGATATGTCCAGGGAAAGCAATGCCTATATTGGGAAATTGAGATCAAATTTTTTGGGAACCAAGTTCACAATCTATGATAGCCAGCTGCCTCATGCAGGGGCAAAGATGACAAAAAGTTGCTCCACTAAGCTGGTGAATCCAAAACAAGTTTCACCTAGGATCCCTACAGGCAACTATCCTGTTGCTCACATCTCATATGAATTGAATGTACTAGGCTCCAGGGGGCCAAGGAGAATGCATTGTGTCATGGATACCATTCCCGCTTCTGCTATTGAACCAGGAGGGGTAGCCCCTTCTCAGAACGATTTTTCTGTTAGTAATGTAGATACTTCATTCCCATTTTTTCAGACAAACTCAACTAGTCTGGAAAACTCCATATCTGGGGACCAGAGCAATAAAGAAGATGATGTGCTTGTGTTGAGAAACAAGGCTGCCAGGTGGCATGAGCAGCTGCAGTGTTGGTGCTTAAACTTTCATGGGCGAGTGACAATTGCTTCAGTTAAAAACTTTCAGCTGGCTGCTTCACCAGAAAATGGACATGCTGGACAACAAGAGGATGAGGTCATTCTCCAATTTGGAAAAGTTGGGAAGGACTTTTTTACAATGGATTACCGGTACCCTATCTCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTCGCTACCACAGTTGCTTGCGAATGA 1080 0.4731 MDGLEQSWWANMPHELLIEVLLRIESSEATWPQRRSVVACAGVCRTWRLIIKELVKPPQLSSNITFPISLKQPGPREHLLQCFIRRNSGTQTYYLFRSLSSALADDGKFLLAARKFRRPTCTDYIISLDADDMSRESNAYIGKLRSNFLGTKFTIYDSQLPHAGAKMTKSCSTKLVNPKQVSPRIPTGNYPVAHISYELNVLGSRGPRRMHCVMDTIPASAIEPGGVAPSQNDFSVSNVDTSFPFFQTNSTSLENSISGDQSNKEDDVLVLRNKAARWHEQLQCWCLNFHGRVTIASVKNFQLAASPENGHAGQQEDEVILQFGKVGKDFFTMDYRYPISAFQAFAICLSSFATTVACE 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00317 359 Pfam F-box domain 9 54 IPR001810 GO:0005515
Pumo4g00317 359 Pfam Tub family 70 354 IPR000007 -
Pumo4g00317 359 PRINTS Tubby superfamily signature 189 216 IPR000007 -
Pumo4g00317 359 PRINTS Tubby superfamily signature 140 164 IPR000007 -
Pumo4g00317 359 PRINTS Tubby superfamily signature 289 305 IPR000007 -
Pumo4g00317 359 PRINTS Tubby superfamily signature 316 335 IPR000007 -
Pumo4g00317 359 PRINTS Tubby superfamily signature 337 359 IPR000007 -
Pumo4g00317 359 PRINTS Tubby superfamily signature 124 140 IPR000007 -
Pumo4g00317 359 PRINTS Tubby superfamily signature 271 288 IPR000007 -
Pumo4g00317 359 ProSitePatterns Tub family signature 1. 289 302 IPR018066 -
Pumo4g00317 359 FunFam Tubby-like F-box protein 66 359 - -
Pumo4g00317 359 SUPERFAMILY F-box domain 4 53 IPR036047 GO:0005515
Pumo4g00317 359 Gene3D Tubby Protein; Chain A 67 359 IPR025659 -
Pumo4g00317 359 SUPERFAMILY Tubby C-terminal domain-like 58 359 IPR025659 -
Pumo4g00317 359 CDD F-box_AtTLP-like 9 53 - -
Pumo4g00317 359 PANTHER TUBBY-RELATED 6 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00317 Pumo-Chr4 4545912 4549050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00317 1 359 TUB Transcription Factor Family AT2G47900 67.308 0.0 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pumo4g00317 Tub 2.9e-108 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00317 K19600 - gmx:100794141 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00317 4 4545912 4549050 Pumo4g00317 4 4545912 4549050 ECH
Pumo4g00317 4 4545912 4549050 Pumo2g00487 2 7907048 7912291 PCT