Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00301 ATGGCCTCCTCTTCTCCCCCTCCTCCTCCCCCCGATCCTCCCTCCGCCGTCCCCCTCGCCCTCGTCCCCCTCCCCGCCCCACCCTCCGCCTCCTCCTCCCGCCGCCTCCCTCCGCCCTGCTGGTCCCCCGATGAAACCCTCGCCCTCATCGACGCCTACCGCGACAAATGGTACTCCCTCGGCCGCGGCAACCTCAAGGCCACCCACTGGCAAGAGGTCGCCGACTCCGTTGCCAACCGCTGCCCCAATGCCTCCCCTCCCAAAACCCCCGTCCAGTGCCGCCACAAGATGGAGAAGCTTCGCAAGCGCTACCGCACCGAGATCCAACGCGCTCGCTCCCTCCCCGTTTCCCGATTCAACTCTTCCTGGGTCCACTTCAAGCTCATGGACTCCATGGAGAAAGGTCCCTCCCCTGTTAAACCCGAAAACGATTCCGACAGTGACAACAATGATAACGACGATGATGACGATGACCAAGATCTCTACCACGATATCAGCCACAACGGCCACACCAGGAGCTTGAACAAGTTGTATAGGAACGGCTTTCCGGGTGGTGGTGGCGCTGCCAGTGGGTTTAGGATTCGGATTCCGACTGGGTTGGGTGCGCCGCCGCAGCCTGGATCTGGCTCCAAGGTGTTTGGGAATCAGAAATTCAGCCCCAATTTGAATCAAAACCCTAACCCTAATTTTGGGAAGAAGAGGGAGAGGGAAAGAGAGAGAGACCCCGTGGGTGAAGTGGTGGCTGCGATTAAGGTTTTGGGAGATGGGTTTGTGAGAATGGAACAGATGAAGATGGAGATGGCCAGGGAGATTGAGACCATGCGGATGGAGATGGAAATGAAGCGCACTGAGATGATTCTAGAATCGCAACAGCGGATTGTCGAGGCATTCGCCAAGGCCGTTTCGGAAAAGAAGAAGCCCAAGACTGTGTCCTCGCCCCAACAGCCTTAA 951 0.5825 MASSSPPPPPPDPPSAVPLALVPLPAPPSASSSRRLPPPCWSPDETLALIDAYRDKWYSLGRGNLKATHWQEVADSVANRCPNASPPKTPVQCRHKMEKLRKRYRTEIQRARSLPVSRFNSSWVHFKLMDSMEKGPSPVKPENDSDSDNNDNDDDDDDQDLYHDISHNGHTRSLNKLYRNGFPGGGGAASGFRIRIPTGLGAPPQPGSGSKVFGNQKFSPNLNQNPNPNFGKKRERERERDPVGEVVAAIKVLGDGFVRMEQMKMEMAREIETMRMEMEMKRTEMILESQQRIVEAFAKAVSEKKKPKTVSSPQQP 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00301 316 ProSiteProfiles Myb-like domain profile. 41 101 IPR001005 -
Pumo4g00301 316 Pfam Myb/SANT-like DNA-binding domain 39 132 IPR044822 -
Pumo4g00301 316 Gene3D - 41 106 - -
Pumo4g00301 316 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 8 303 IPR044823 -
Pumo4g00301 316 MobiDBLite consensus disorder prediction 132 168 - -
Pumo4g00301 316 MobiDBLite consensus disorder prediction 1 38 - -
Pumo4g00301 316 Coils Coil 94 114 - -
Pumo4g00301 316 MobiDBLite consensus disorder prediction 1 34 - -
Pumo4g00301 316 FunFam Trihelix transcription factor ASIL2 41 106 - -
Pumo4g00301 316 SMART 118neu2 48 137 IPR006578 -
Pumo4g00301 316 MobiDBLite consensus disorder prediction 209 229 - -
Pumo4g00301 316 MobiDBLite consensus disorder prediction 195 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00301 Pumo-Chr4 4391502 4394228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00301 1 132 Trihelix Transcription Factor Family AT3G14180 33.562 5.87e-20 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pumo4g00301 Myb_DNA-bind_4 4.9e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00301 - - vun:114179736 459.914