Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00258 ATGTTATTGTCGACCTCAATATGTATCCCTACGCCGAATCGAATTTCGAAGCAATCAAAGTGTGTGTGTGCTACTATTCCTTCACTGTCAGTTTCTTCTGCATCTGCTGTTCTTCGCAACGCGTCGTTTTGCTCCACCTCTTCTGTCCAATGCAATTTGCCTTCTTCATCCAAAATCTTCGTCAGAGGGCTACCTCTCTCAATCTCTGAAGGACGTTTGATGAAGGTGTTTTCAGAGTTTGGTGAAGTTACTCTAGTCCAGCTTCCAATAGATAAAGAATCTGGGCAGTCTTTAGGATTTGCATATATTAGGTTTGCAGAGGAAAAGTCTGCACAATTGGCTGTGCAAGAGATGAATGGAAAGGTGTGCCGTGTGCATGACTTTTTGAGAGTTTCCAACTATAAGAGATATCCTATCCATACTAAAATGTTATTGACCTGGGAGCTGGTTTTGTGGTGCAGTTTTTTGATGGCAGGTTTATTTATGTTACAATTGCAAAGCCCGGATCATCAAAAAGTTCAAAGAGGACAACAACCTACAATTTTTAATCATATGAGCAGTTGCCAATAG 570 0.4088 MLLSTSICIPTPNRISKQSKCVCATIPSLSVSSASAVLRNASFCSTSSVQCNLPSSSKIFVRGLPLSISEGRLMKVFSEFGEVTLVQLPIDKESGQSLGFAYIRFAEEKSAQLAVQEMNGKVCRVHDFLRVSNYKRYPIHTKMLLTWELVLWCSFLMAGLFMLQLQSPDHQKVQRGQQPTIFNHMSSCQ 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00258 189 SMART rrm1_1 58 132 IPR000504 GO:0003723
Pumo4g00258 189 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 122 IPR000504 GO:0003723
Pumo4g00258 189 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 136 IPR000504 GO:0003723
Pumo4g00258 189 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 46 137 - -
Pumo4g00258 189 SUPERFAMILY RNA-binding domain, RBD 49 123 IPR035979 GO:0003676
Pumo4g00258 189 Gene3D - 16 130 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00258 Pumo-Chr4 3770641 3773572 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00258 54 136 Eukaryotic Initiation Factors Gene Family AT2G36660 34.091 4.83e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00258 - - ccaj:109808459 193.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00258 4 3770641 3773572 Pumo4g00258 4 3770641 3773572 ECH