Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00256 ATGAACATGCTTTCGGTGTCAGCGCTGTGCAAGCCCGTAGCGAGTTTCAACCCGGCATCACTGAGGATGGACTCGCTGTCCCTCTTCCGGCACCGCAACAAGGAAAAAGTTGTGGTAATCATGGGCGCAACGGGGACAGGAAAGTCAAAACTTGCCATAGATCTCGCCACGCAATTCCCACCAGCAGAGATAGTCAACTGCGACAAAATGCAAGTGTACGATGGCCTAGACATCACCACAAACAAAGTCACTGAGGAAGAGCGTCGCGGGGTCCCACACCATCTCCTAGGCACGGTGAATCCTAACACCAATTTCAGTGCCCAAGACTTTTGCGAGCACGCCACCCACGCCGTTGGGTCCATTTTGGGCCGTGACGGTTTACCCATCATTGCGGGTGGGTCCAACTCTTTTCTGGATGCGTTGGTCAACCATCACACCGAGTTTCGGTTACGGTACGAGTGCTGCTTCCTCTGGGTCGATGTTTCACTCCCCGTGCTCCATTCCTCTCTCTCCGCACGTGTGGATCGCATGATCCACGCTGGCCAGGTCCACGAGGTTCGACAAAGTTTTCAATACCACAACCAGGACTATACCGTAGGGATACGAAAGGCCATTGGTGTCCCAGAGTTTCATGATTTTTTCAAAGCCGAAGCCGACAAAGCCGATGAGAGGACCAAACGGCGGCTCCTCGAGGCTGCCATTGCTTCCCTCAAGATCAACAACTGCAACCTCTCGAACCGACAGCTTCTCAAGATTCATCGCCTTTACAACATGTGGAAACGGAACATGCACCGCCTCGACGCCACCGAGGTTTTCCTCAAGAGCACTCGCGAGGAAGCAGAGAAGGCGTGGGAGGATCACGTTTTATCCAAGAGCCGAAGGATTCTCCATAAGTTTCTCTACGAGGATACGCATGTTCCCGCAGGTATTGATGCGTCTGTCATTGCTTCTTCGCCGCCGGCCATGGCTGCCGCCGCCGCAACTCACTAG 990 0.5394 MNMLSVSALCKPVASFNPASLRMDSLSLFRHRNKEKVVVIMGATGTGKSKLAIDLATQFPPAEIVNCDKMQVYDGLDITTNKVTEEERRGVPHHLLGTVNPNTNFSAQDFCEHATHAVGSILGRDGLPIIAGGSNSFLDALVNHHTEFRLRYECCFLWVDVSLPVLHSSLSARVDRMIHAGQVHEVRQSFQYHNQDYTVGIRKAIGVPEFHDFFKAEADKADERTKRRLLEAAIASLKINNCNLSNRQLLKIHRLYNMWKRNMHRLDATEVFLKSTREEAEKAWEDHVLSKSRRILHKFLYEDTHVPAGIDASVIASSPPAMAAAAATH 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00256 329 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 34 299 IPR039657 -
Pumo4g00256 329 FunFam Adenylate isopentenyltransferase 5, chloroplastic 163 263 - -
Pumo4g00256 329 ProSiteProfiles Guanylate kinase-like domain profile. 35 123 IPR008144 -
Pumo4g00256 329 Gene3D - 34 300 IPR027417 -
Pumo4g00256 329 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 163 263 - -
Pumo4g00256 329 Pfam IPP transferase 149 249 - -
Pumo4g00256 329 Pfam IPP transferase 71 145 - -
Pumo4g00256 329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 148 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00256 Pumo-Chr4 3738180 3739978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00256 151 313 C2H2 Transcription Factor Family AT2G27760 29.630 1.28e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00256 K10760 - gmx:100778430 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00256 4 3738180 3739978 Pumo2g00418 2 7091381 7093363 PCT