Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00251 ATGGGAATTTCATGGAGTAACAGTAACAGAAGAAGAAGAAGAAACACTTACTTTCATCCTCCACCTCCACCTCCACATCTCCCACCCCCTTACTATTACCATCCACCGCCACAAGGTTACTTTATTACCTCAACTAACCCTTCTGCTTCTACCACCACCAGCTACGTGGGTCCTCCTCCTCCACCTCCTCAGTATTACCCAAATGGCTACACTGCCAATTCCGTGATGCTCCATCAGCAGCCCTTGTATGGAAATCATGCTTCGCCACCACCCTATGTTGATCATCAAACCACTAAGAAGATAAGGAACGATGTCAATTTGCATAAACACACTCTGCGCCTCCACCTAGATCCTAATAATCCAGATCACCACTTGATTTCCTTTGATTTTGATGCCCTCTATCATGGCAGCATTACAATCTTCTACCTAGCCAAAGAAGAAGAAAAATGTAGGTTTGTTCCACTATTCCCTGATGTGTTTGAGCCAATCACATTCCCCTTTCAGAAAGGAGCTGGCCAGAAATTTTGTCAGCCTTCAGGAACAGGCATTGACCTAGGTTTTTTTGAGTTGGATGATCTTTCTCAGCCCTCACCCGAAGAAGATGTATTTCCCCTTGTTATATGTGCTGAAACTACTAGTAATTCCGTACTAGATGCATCCCCTCGCATGCAAATAACTCAAGCCGTCTTAGAGAAAAGCAATGGTATTGGTCCTTTCCAGGTAAAAGTAGTTAGGCAGATTCTGTGGATTGATGATGTTTGTTATGAGCTCAGAGAGTTATATGGAATAGGAAGTTCAACAGCAGCAGATTTTGATGATAATGATCCTGGAAAGGAGTGTGTAATATGCATGACTGAACCCAAGGACACAGCTGTCTTACCCTGCCGACATATGTGTATGTGCGGTGAGTGTGCCAAAGCTTTGCGGCTTCAATCAAATAAATGCCCTATATGTCGTCAACCAATTGAGGAACTTATAGAGATCAAGATAAATAATGGCAATCAATGA 1008 0.4315 MGISWSNSNRRRRRNTYFHPPPPPPHLPPPYYYHPPPQGYFITSTNPSASTTTSYVGPPPPPPQYYPNGYTANSVMLHQQPLYGNHASPPPYVDHQTTKKIRNDVNLHKHTLRLHLDPNNPDHHLISFDFDALYHGSITIFYLAKEEEKCRFVPLFPDVFEPITFPFQKGAGQKFCQPSGTGIDLGFFELDDLSQPSPEEDVFPLVICAETTSNSVLDASPRMQITQAVLEKSNGIGPFQVKVVRQILWIDDVCYELRELYGIGSSTAADFDDNDPGKECVICMTEPKDTAVLPCRHMCMCGECAKALRLQSNKCPICRQPIEELIEIKINNGNQ 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00251 335 PANTHER MAHOGUNIN 1 329 IPR045194 GO:0061630
Pumo4g00251 335 Pfam Zinc finger, C3HC4 type (RING finger) 278 324 - -
Pumo4g00251 335 SUPERFAMILY RING/U-box 279 325 - -
Pumo4g00251 335 ProSiteProfiles Zinc finger RING-type profile. 280 319 IPR001841 -
Pumo4g00251 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 329 IPR013083 -
Pumo4g00251 335 SMART ring_2 280 318 IPR001841 -
Pumo4g00251 335 MobiDBLite consensus disorder prediction 1 25 - -
Pumo4g00251 335 FunFam probable E3 ubiquitin-protein ligase LOG2 264 329 - -
Pumo4g00251 335 CDD mRING-HC-C3HC5_MGRN1-like 278 319 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00251 Pumo-Chr4 3676694 3679295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00251 31 335 C3H Transcription Factor Family AT3G06140 55.340 3.91e-105 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00251 - - gmx:102665712 561.607