Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00249 ATGACCTCCTCAGCGGTTACGGAACAATTTGACAAATGCATGAAGAAACAAGTAGAAGCAATTGCACGAGTTTTGCATTTATTTCAATCCTACAAAGAGGACAATATTCCGTGCAAAATCGACGAGGGTCTCTATTTGGGTTCGATTGCCACTGCGGCTAACAAGCCTGCTTTGAAAGACTGTAATATTACCCACATTTTGACTGTGGCTGGTAGAATACCACCTGCACATCCTCAGGATTTTTTCTATAAAATTATAGACGTTGTTGACAAAGACGATGAAGACTTAAAACAATACTTCAATGAGTGTTTTGATTTTATTGATGAAGCCAAAAGACACGGTGGAGGTGTTTTGGTTCACTGTTTTGCTGGAAGATCAAGGAGTGTGACTATAGTTGTGGCATATCTGATGAAGACTCGTGGAATGAGCTTTTTTGAAGCTCTGCAACATGTAAGGAGTATACGACCAGCAGCAGGTCCCAATCATGGTTTCATTTCTCAGCTGGAGGACTTTGAAAAGTCTCTTCAAGGTGCCTCCAAATTGCATTAG 549 0.408 MTSSAVTEQFDKCMKKQVEAIARVLHLFQSYKEDNIPCKIDEGLYLGSIATAANKPALKDCNITHILTVAGRIPPAHPQDFFYKIIDVVDKDDEDLKQYFNECFDFIDEAKRHGGGVLVHCFAGRSRSVTIVVAYLMKTRGMSFFEALQHVRSIRPAAGPNHGFISQLEDFEKSLQGASKLH 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00249 182 ProSiteProfiles Dual specificity protein phosphatase domain profile. 36 177 IPR020422 GO:0006470|GO:0008138
Pumo4g00249 182 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 35 179 IPR029021 -
Pumo4g00249 182 SMART ptp_7 60 180 IPR003595 -
Pumo4g00249 182 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 32 175 - -
Pumo4g00249 182 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 98 156 IPR000387 GO:0016311|GO:0016791
Pumo4g00249 182 SMART dsp_5 36 174 IPR020422 GO:0006470|GO:0008138
Pumo4g00249 182 FunFam Dual specificity phosphatase 12 38 181 - -
Pumo4g00249 182 Gene3D Protein tyrosine phosphatase superfamily 38 182 IPR029021 -
Pumo4g00249 182 Pfam Dual specificity phosphatase, catalytic domain 44 173 IPR000340 GO:0008138|GO:0016311
Pumo4g00249 182 CDD DSP 37 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00249 Pumo-Chr4 3623882 3626928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00249 39 177 Protein tyrosine phosphatase (PTP) family AT3G06110 61.151 2.05e-58 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00249 - - gmx:100306342 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00249 4 3623882 3626928 Pumo4g00249 4 3623882 3626928 ECH