Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00238 ATGGCAAATTTCACCTCTTCCTCTTCCTCTTCCTCTTCTTCTCCCTTACCTCTAACTATGTCACACATTTCAACTCCGTCATCTTCTGCGCCTTTCGACGACAGTTCCGAGGACGCCTGCAGCATATGTCTAGAGCCATTCAGCACCCATGACCCTGCCACCATTACCAGTTGCAAACATGAATATCATCTGCATTGTATTCTTGAATGGTCACAGAGAAGCAAAGAATGCCCAATATGTTGGCAGTTACTTATCTTGAAAGACCCTGCCAGCCAAGAGCTTCTAAATGCAGTGGAGGCTGAAAAGCGCTTAAGTTATTCACATGCATTCCCTAATTCTCGTAGCCCCCTTCAACGGCTTAACAATGACCATGATGATTCTTGTTCAGATGACTCTGATTTTGATGAACAACTTATGCAGCAGCACCTAGTTTCTGATGCAAGTAGAGCTCGGTATATCTGCAGACGGGAAAGGCAGGGATCCCCTGGATCAGGTCCCTCAGAGGTTCTTGTTTTTAACTCTTCTATGCATGCATCAGGGATGCAACCAACACTTACAACTTCACCACCTGCGGGTAGTTCACCAACTTCTGGTGTAGCTTCTGCTGCTCACAATCAACCTCCAACATATGCTTTTTCCTCTGTTGGCATGGTTACAACAAATACTTCTTCTGAGAGTGACATGCCTTCCAAACCCAGAGTTATCTATAGCCAGCCATCACCTGAGAGTGCTAAGAGACTAAACACTTCTGAGATGTTCTCCTTCCCTGAGTCCATTAAATCCAAACTTTCTGCTGCTTCAGCCAGATGTAAGGAATCAATTTCAAAAAATACCCGTGGTCTTAAAGAGAAGTTGATTGCACGTAATGCTTCAGTGAAAGAGCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCAGGCATTGCTGGTGTTGCACGAATGATTGAACGTCTTGATCTTACCTCAAAACGGTCCTCATCTCCTCTCATCCCTGTAAAAGGGAAGTCTGTCCAAGAGAATGGTATTGGACAGTCTCCTAGTGAAGAGAGACAAGCCTTGGTTGGTGATGTTACTTCAAATGCTTCCTCACTCGATTCTAGCTTGGTTGCTGTTCAAGTGGAAATTCCTTCTTCATGTGTTCAGAGTGGACATGATGCTGTGAGGACTTAG 1167 0.4482 MANFTSSSSSSSSSPLPLTMSHISTPSSSAPFDDSSEDACSICLEPFSTHDPATITSCKHEYHLHCILEWSQRSKECPICWQLLILKDPASQELLNAVEAEKRLSYSHAFPNSRSPLQRLNNDHDDSCSDDSDFDEQLMQQHLVSDASRARYICRRERQGSPGSGPSEVLVFNSSMHASGMQPTLTTSPPAGSSPTSGVASAAHNQPPTYAFSSVGMVTTNTSSESDMPSKPRVIYSQPSPESAKRLNTSEMFSFPESIKSKLSAASARCKESISKNTRGLKEKLIARNASVKELSKGVQREMNAGIAGVARMIERLDLTSKRSSSPLIPVKGKSVQENGIGQSPSEERQALVGDVTSNASSLDSSLVAVQVEIPSSCVQSGHDAVRT 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00238 388 ProSiteProfiles Zinc finger RING-type profile. 40 80 IPR001841 -
Pumo4g00238 388 MobiDBLite consensus disorder prediction 111 132 - -
Pumo4g00238 388 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 6 89 - -
Pumo4g00238 388 MobiDBLite consensus disorder prediction 220 243 - -
Pumo4g00238 388 SMART ring_2 40 80 IPR001841 -
Pumo4g00238 388 FunFam E3 ubiquitin-protein ligase RHF1A 25 92 - -
Pumo4g00238 388 SUPERFAMILY RING/U-box 32 87 - -
Pumo4g00238 388 Pfam Ring finger domain 39 80 IPR001841 -
Pumo4g00238 388 MobiDBLite consensus disorder prediction 1 30 - -
Pumo4g00238 388 MobiDBLite consensus disorder prediction 324 356 - -
Pumo4g00238 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 84 IPR013083 -
Pumo4g00238 388 MobiDBLite consensus disorder prediction 179 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00238 Pumo-Chr4 3517557 3520662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00238 34 88 C3H Transcription Factor Family AT4G00335 45.455 2.29e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00238 K19043 - gmx:100775754 588.956