Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00237 ATGGCTCTGCTAGATGGAGGAACATTGAAAAGACACAAGACTTGGTTAAAGGCAGAGCCTCCAACAATAGTGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGAAAGACATATTTTTTCACTTGAAACTGTGCGGGTGCTGATTGTTGATGAGGTTGACTGCATTTTCAATTCTTCAAAGCAAGTGAGTTCTCTTCGAAAGATTTTGACTTCATATTCATCTTGCAATAACCGTCAGACAGTCTTTGCCAGTGCATCTATACCACAGCACAACCGATTTATTCATGACTCTGTGCAGCAGAAATGGACAAAGATATGTGATACCAAAAGAAAATTACAAACCCTGTTATCCTTGATACAATCTGATCCACCTGAGTCTGGCATTATATTTGTTGCTGAGCAGTCTGAGAAGTCAAAAAAGGCTGGAAAGGCTCCATCAACATCCCTTCTGATTGACTTTTTGAAGACATCATACCAAGGTGATTTAGATATCCTCCTCCTTGAAGACAAAATGAATTTCAATTCACGAGCAGCTTCACTGTTGGAGGTTAGAAAAGGAGGTGGCTATCTTCTTGTAGCAACAGATATTGCGGCTAGGGGAGTTGACCTTCCAGAAATGTCTCACATTTACAACTTTGATCTACCAAGGACTGCTATAGATTATCTTCATCGAGCAGGGCGAACTTGTAGAAAACCCTTTTCTGACATCAATTGTACTGTTACCAGCATTATAGTTCCAGATGAGCGATTTGTTCTGCAGAGATATGAAAATGAGTTGATGTTTAACTGTGAAGAGCTTATTCCATAA 810 0.3988 MALLDGGTLKRHKTWLKAEPPTIVVATVGSLCQMLERHIFSLETVRVLIVDEVDCIFNSSKQVSSLRKILTSYSSCNNRQTVFASASIPQHNRFIHDSVQQKWTKICDTKRKLQTLLSLIQSDPPESGIIFVAEQSEKSKKAGKAPSTSLLIDFLKTSYQGDLDILLLEDKMNFNSRAASLLEVRKGGGYLLVATDIAARGVDLPEMSHIYNFDLPRTAIDYLHRAGRTCRKPFSDINCTVTSIIVPDERFVLQRYENELMFNCEELIP 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00237 269 SMART helicmild6 149 233 IPR001650 -
Pumo4g00237 269 Pfam Helicase conserved C-terminal domain 112 231 IPR001650 -
Pumo4g00237 269 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 112 269 IPR001650 -
Pumo4g00237 269 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 106 260 - -
Pumo4g00237 269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 257 IPR027417 -
Pumo4g00237 269 Gene3D - 102 266 IPR027417 -
Pumo4g00237 269 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 106 IPR014001 -
Pumo4g00237 269 CDD SF2_C_DEAD 99 231 - -
Pumo4g00237 269 Gene3D - 1 101 IPR027417 -
Pumo4g00237 269 Pfam DEAD/DEAH box helicase 6 90 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00237 Pumo-Chr4 3510487 3515334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00237 6 267 Eukaryotic Initiation Factors Gene Family AT5G11170 27.473 7.08e-18 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00237 - - gmx:100786205 513.072