Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo4g00228 | ATGGATTGCGACGAACCTCCCTCTCCCTATCCCTATCCCCATTCATCCACCCTTCTCAAGGACATTTCCAACTTCACAACCCCAAGACGCCCCCCTTTCTCTCTCACCACCGCCCAATCTCCCGCCACCCAATTCTTCACCGCCTCCAAACACCCTTCCTCCTCCTTCCACCGCCGTCCCAACAAATCATCCACCGCCGCCGCTAAGAAACTCAAGGCCTTCCAATTGGAGCAGTCCCAGTCCTCCCGCAAGGCCCAAATCAAGAAGGAACACTCCCTTAAATCCCTCGCCAAGTCCATCTCCGTCTGGCTCAACTTCCTCCTCCAAAACCCTACCTCCTGCGGCTGCCACTTCTCTGCCAATGCTGCCCCCGCTCCCGCCACCAACGGCAAGCGAGACGGCGCCCCGGGAACCTCCGTCGTCGCCGTCGATTCCACGTGGCGAACTCCCAAGCGCCAGAGGAAGACCTGGTCCGCTAAGGAAAATGCCGCCACTGCGGCTGAGGTTCCTGATTCCTCCTTTTCGCAACTCAGGGATTCTCTCAAGGATGTATGCAGTTTCGACGATTTGAAGCAGCGGATGAGGGTTTATCTCAGCCTCGCAGCTTGTAAAGAGATCTTCCAACAAATGAATCGCGTCACCAAGACAATTGACGAAGGAAGGCTGATTATGAAGGCGCACTGCCCTATAGTAACTGATGTAGGGTTGAAGGATAAGGCCACGAGAATTCTCATGTGTTATAATCCAATTTGGTTGCGAATTGGATTGTATATAATCTTTGGCGGTGACTCCTTAGTGTTAAATGGTGATGTTGATTCTGATAAAGATGTTGTGTTCTTGAGAATGGTCATTGACAAGCTATTTTTTTCACATGAGGGTTTAGCTAAAGCATATGCTTATAACAAGATGGTTGAAGGCGTGTATAGGTCGGGTTACTATGAGAATTTGGGGAATGTGATTTTGAAGAGAATTTTGTTACTTGTGCTTGTCCTGGATAAAGCTAAATGCCAGAGTTACCTCCCACTGGAGTACGGTATTGATGGATTGGATGGGGGTTCCCCTTTGTTATTCAAACCAGAATCCTGGATTAAATCAAGTAGTCAGCTGATTCATGAATTTCTATCGTCTGATATAATGCACGGAGAAGGCAATCTTCTAACACATTTGGTGATTTTAAGTTACAAATTATCTCATCAACAGGAACCTATTGTTGAGTGTGATTTCAGGGTCAGAGATTTATTTGTAGATCTCCAAGATGGATTAAAATTGTGTAGAGCTATTCAGCTCTTGCAGCATAATTCTTCGATCCTCATGAAAATCGTAGTTCCCTCTGATACTCCAAAGAAAAAATTGGCAAACTGTGGTCTTGTCCTACAATATATTAGGCATGCTGGTGGCTCACTACTTGATGAAGATGGCATCATGATTGTGGCAGATGATATTGTTAATGGAGACAAAGAACTTACACTTTCCTTGCTGTGGAATATGTTTGTTCATTTGCAGCTACCTCTTTTGGTTGATAAAACAAGTTTAGTTGGGGAAATTTCTAAAATTCGAGGATTTGGCACGGATCTCATAAACAATGCGAATTCTAGTTCTATGGAATTGCTTTTGAATTGGATTCAGGCAGTTTGTGACAATTATGATTGTGCAATTGACAATTTTCGTTCCCTTGTTGATGGCAAAGCTATCTGGTGCTTACTTGATTATTACTTCCAGAAAGAACTTCATAATTCCTGTTCATTGAAGGAAGTTAATAAGAAAAGTGGCAAGGCATCAATTATGCCGGTCAATGAATATTCAGATGCACTATATAATTTTATATTATCCCAAAAGTTGACTACATTACTGGGGAACTTCCCAGAGGTGCTTCAAATTAGTGAGCTACTTCAATATAATGGTGCTTGCAGTGATCGAAGTGTGGTGATTTTGTTGGTTTTCCTAGCAAACCAATTATTTGTTAAGAAAAAATTGGATCACTTAAATTTCCATAAGCTCTTGGGTTATGACTGCCAAAGTCCGAACCATAGACATTTGAGGATGCTGCGATGCCTTTCAAATTCTGAATCAGTACAAAACCCTGATGCTTCCGATGTGCATGGAAATGAAGTGTCCCAAAACAAAACATCCCAGATTAATTATAACAATGGTATGATGCTGCGAGAAAATTCAAGGCCATCCAAGCATTGGTGGCAAGATATGGCTGAAAAAAACTGTATCAACAAACCTGCTGTCTCTAATTTGCAGAGATCCAGTACCACTGAATGCAGCACCAACATTAGAAGAGAAAATGCTGCAAGAACAATACAACTGCATTTCAGAGGATTGATTGCACGGCGCAAGTTTCTGAAGATGGTAAATGCTGTTACCCATTTGCAATCTGTTTTCAGAGCTTGGCTAAAAGTGAGGCAAGAGTCAGTCTGCATGATATTATCTACTGTTCAAGTCTGTGACTCTTCATGTGAAATATTGAAGCAATCAGAAACATATAAGAGATATGCCATGCTTTTCATTCATAGACATTCCTTTTTGAGGTTGAAGAGGTCAGCACAGCTTATCCAGCAATCAGTTAGGAGTTGGCTCTATCGGAGGCATCAGCAAGAATGTAGTACAAGTCCTGATCTTATGATTTCAGATATGGTGGCAGCTGCTATTACTGTTCAGAAATTTGTCCGTGGTTGGCTGGCACGATCTAGATATATTCATCAGCTAGATCAGAAAGAGAAAGCTTGTTTGGAAACAAATGCAGCAATTATCATTCAGCTTGCTTGGAAAAAGTTCATATGCTGCAAGTCTACTCAGAAGCAACACCTGTTTGCAACTAAAATTCAATCTTATTTTCGAATGTGGAGATGTGTAAATGCTTTTCAGCACTTCAAAATTGAGTATAAGGCATCTGTTGTCATTCAATCTTTCTTACGAGGATGGTTTGCAAGAAAGAATGCTTGTGCGCGTAGGAATCACCTGTTTGCAACTAAAATTCAACGAAATTTCCGTAGGTGGTTGTTGAGAAAAAGTTTTTTAAATCAGATTCAAGCTGTCATAAAAATTCAATCTTATTTTCGAATGTGGAGATGTGTAATTGCTTTTCAGCACTTCAAAATTGAGTTTAAGGCAGCTGTTGTCATTCAATCTTTCTTACGGGGCTGGTTTGCACGAAAGGATGCTTGTGCGCATAGAAATCACATTGTTGAAATTCAAAGGCATTGCCGTGGTTGGCTGGTGAAGCGGGACTTCTTGTTCCAAAGAGACGCTGTAGTAAAGATCCAATGTGTCATTCGGAGCTTGAAGTGCCAGAAGGCTCTCAATTGCCAGAAAGATGCTGCTTTGGAGATTCAACGCTTTATAAGGGGGCATTTAACTCGGAATCAGCTATTAGGTAGTGCTTCCAAGTCACGCACAGTTATTCCTATTAGTTGCATTTCAAGACCATTTGGCTTTCGTAGTTTTCAACTGGAACTATTCTTGTTTTTGGTTGTGAAATTGCAACGATGGTGGAAGGGTCTCTTGTTGCTTAAACTAAAGAATAAATCGGCCATCATTATTCAGTCATGTACCCGTGGGTGGATAGCCAGGCGAAAGGCTACTGTTTTCAGACACCATATTGTCATCCAAGAAGATGCCGCATTGGTGATTCAACGCTATATTAGGGGGCATTTAACTCGAAATCGGAATTTAGGTGGTGCTTCTAACCTAAGTGAAGTCGTTCCCGCTGGCTACATTTCAAGACCAGTTGGCTGTCGTAGTTTTCAACTGGAACTATTTTTGCTTTCAGTTGTGAAATTGCAACGATGGTGGAAGGGTCTCTTGTTACAGAAATTGATGACAAAGTCTGCCATTGTTATTCAGTCTTGTACTCGTGGGTGGATAGCCAGGCGAAAGGCCACTGTTCAGAAACATCGTATTATTGTCATCCAATCCCACTGGAAAGGTTACCTTGCACGTAAAGAGTCAAAAGAACAGTTATTGGATTTGCGCTTGAGAATGCAAAAGTCTGCCAGAAATGTGGATGATAGCAAGCGTCTCATAAACAGACTCTTGGCAGCGCTTTCAGAGCTACTTAATATGAAGAGTCTTAGTAACATCCTTCATACTTGTTCAACATTGGATATGGCTACAGGACATTCACAGAAATGTTGTGAAGAACTTGTGGCTGCAGGGGCCATCGACACCTTGTTGCGGCTAATTCAAACAGTCAGCCGAAGTATACCTGATCAGGAGGTTCTAAAGCATGCTTTGTCAACACTCCGAAATCTCGCCCGCTATCCTCATCTACTACAAGTGTTGATCCAAAGTCGTGGTTCTGTACAGATAATTGTCTTGGAGTTATTGAGGAATAAAAACGAGGGCTACTTCGTTGCTTCTGAACTTTTGAAGAAGATATGTTCAACTCGTGCAGGCGTTGAGACGATATTCAAGTCCCCTGCCCTGCTAAAACGACTGCATGGTCTTGTTGAGGACCTTATACGGAAGGGAATTTACGAGAAAAGAAATCCTAGGGCTTCTAGCCTGGTTATCAAAGAAATCAGAGAGAAAAGATTGAAGGAGGCTGCTGAGATTCTGAAGCTGATAACAAGCGCCTGA | 4584 | 0.4232 | MDCDEPPSPYPYPHSSTLLKDISNFTTPRRPPFSLTTAQSPATQFFTASKHPSSSFHRRPNKSSTAAAKKLKAFQLEQSQSSRKAQIKKEHSLKSLAKSISVWLNFLLQNPTSCGCHFSANAAPAPATNGKRDGAPGTSVVAVDSTWRTPKRQRKTWSAKENAATAAEVPDSSFSQLRDSLKDVCSFDDLKQRMRVYLSLAACKEIFQQMNRVTKTIDEGRLIMKAHCPIVTDVGLKDKATRILMCYNPIWLRIGLYIIFGGDSLVLNGDVDSDKDVVFLRMVIDKLFFSHEGLAKAYAYNKMVEGVYRSGYYENLGNVILKRILLLVLVLDKAKCQSYLPLEYGIDGLDGGSPLLFKPESWIKSSSQLIHEFLSSDIMHGEGNLLTHLVILSYKLSHQQEPIVECDFRVRDLFVDLQDGLKLCRAIQLLQHNSSILMKIVVPSDTPKKKLANCGLVLQYIRHAGGSLLDEDGIMIVADDIVNGDKELTLSLLWNMFVHLQLPLLVDKTSLVGEISKIRGFGTDLINNANSSSMELLLNWIQAVCDNYDCAIDNFRSLVDGKAIWCLLDYYFQKELHNSCSLKEVNKKSGKASIMPVNEYSDALYNFILSQKLTTLLGNFPEVLQISELLQYNGACSDRSVVILLVFLANQLFVKKKLDHLNFHKLLGYDCQSPNHRHLRMLRCLSNSESVQNPDASDVHGNEVSQNKTSQINYNNGMMLRENSRPSKHWWQDMAEKNCINKPAVSNLQRSSTTECSTNIRRENAARTIQLHFRGLIARRKFLKMVNAVTHLQSVFRAWLKVRQESVCMILSTVQVCDSSCEILKQSETYKRYAMLFIHRHSFLRLKRSAQLIQQSVRSWLYRRHQQECSTSPDLMISDMVAAAITVQKFVRGWLARSRYIHQLDQKEKACLETNAAIIIQLAWKKFICCKSTQKQHLFATKIQSYFRMWRCVNAFQHFKIEYKASVVIQSFLRGWFARKNACARRNHLFATKIQRNFRRWLLRKSFLNQIQAVIKIQSYFRMWRCVIAFQHFKIEFKAAVVIQSFLRGWFARKDACAHRNHIVEIQRHCRGWLVKRDFLFQRDAVVKIQCVIRSLKCQKALNCQKDAALEIQRFIRGHLTRNQLLGSASKSRTVIPISCISRPFGFRSFQLELFLFLVVKLQRWWKGLLLLKLKNKSAIIIQSCTRGWIARRKATVFRHHIVIQEDAALVIQRYIRGHLTRNRNLGGASNLSEVVPAGYISRPVGCRSFQLELFLLSVVKLQRWWKGLLLQKLMTKSAIVIQSCTRGWIARRKATVQKHRIIVIQSHWKGYLARKESKEQLLDLRLRMQKSARNVDDSKRLINRLLAALSELLNMKSLSNILHTCSTLDMATGHSQKCCEELVAAGAIDTLLRLIQTVSRSIPDQEVLKHALSTLRNLARYPHLLQVLIQSRGSVQIIVLELLRNKNEGYFVASELLKKICSTRAGVETIFKSPALLKRLHGLVEDLIRKGIYEKRNPRASSLVIKEIREKRLKEAAEILKLITSA | 1527 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo4g00228 | 1527 | Gene3D | - | 1173 | 1227 | - | - | |
| Pumo4g00228 | 1527 | Gene3D | - | 1273 | 1322 | - | - | |
| Pumo4g00228 | 1527 | Gene3D | - | 936 | 987 | - | - | |
| Pumo4g00228 | 1527 | Gene3D | - | 1083 | 1129 | - | - | |
| Pumo4g00228 | 1527 | Gene3D | - | 879 | 935 | - | - | |
| Pumo4g00228 | 1527 | Gene3D | - | 1036 | 1082 | - | - | |
| Pumo4g00228 | 1527 | Gene3D | - | 761 | 809 | - | - | |
| Pumo4g00228 | 1527 | Gene3D | - | 988 | 1035 | - | - | |
| Pumo4g00228 | 1527 | Gene3D | - | 526 | 655 | IPR036872 | - | |
| Pumo4g00228 | 1527 | Pfam | Armadillo/beta-catenin-like repeat | 1376 | 1421 | IPR000225 | GO:0005515 | |
| Pumo4g00228 | 1527 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 916 | 982 | IPR027417 | - | |
| Pumo4g00228 | 1527 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1034 | 1125 | IPR027417 | - | |
| Pumo4g00228 | 1527 | ProSiteProfiles | IQ motif profile. | 991 | 1016 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | Gene3D | - | 394 | 501 | IPR036872 | - | |
| Pumo4g00228 | 1527 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 992 | 1055 | IPR027417 | - | |
| Pumo4g00228 | 1527 | ProSiteProfiles | IQ motif profile. | 1036 | 1065 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | ProSiteProfiles | IQ motif profile. | 1175 | 1202 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | ProSiteProfiles | IQ motif profile. | 1059 | 1088 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | SUPERFAMILY | ARM repeat | 1344 | 1489 | IPR016024 | - | |
| Pumo4g00228 | 1527 | ProSiteProfiles | IQ motif profile. | 1105 | 1134 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | PANTHER | UNCHARACTERIZED | 40 | 867 | - | - | |
| Pumo4g00228 | 1527 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1257 | 1321 | IPR027417 | - | |
| Pumo4g00228 | 1527 | Pfam | Calponin homology (CH) domain | 409 | 499 | IPR001715 | GO:0005515 | |
| Pumo4g00228 | 1527 | SMART | iq_5 | 1081 | 1103 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | SMART | iq_5 | 986 | 1008 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | SMART | iq_5 | 1204 | 1226 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | SMART | iq_5 | 1297 | 1319 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | SMART | iq_5 | 961 | 983 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | SMART | iq_5 | 1058 | 1080 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | SMART | iq_5 | 1274 | 1296 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | SMART | iq_5 | 845 | 867 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | SMART | iq_5 | 761 | 783 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | SMART | iq_5 | 1174 | 1196 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | SMART | iq_5 | 1009 | 1031 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | SMART | iq_5 | 1104 | 1126 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | SMART | iq_5 | 784 | 807 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | SMART | iq_5 | 1035 | 1057 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | SMART | iq_5 | 879 | 901 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | SMART | iq_5 | 935 | 957 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | ProSiteProfiles | IQ motif profile. | 1275 | 1302 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | ProSiteProfiles | IQ motif profile. | 762 | 791 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | Pfam | IQ calmodulin-binding motif | 1038 | 1055 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | Pfam | IQ calmodulin-binding motif | 764 | 782 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | Pfam | IQ calmodulin-binding motif | 1177 | 1194 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | Pfam | IQ calmodulin-binding motif | 964 | 981 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | Pfam | IQ calmodulin-binding motif | 1276 | 1294 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | Pfam | IQ calmodulin-binding motif | 1107 | 1125 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | Pfam | IQ calmodulin-binding motif | 940 | 956 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | Pfam | IQ calmodulin-binding motif | 882 | 900 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | Pfam | IQ calmodulin-binding motif | 1207 | 1224 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | Pfam | IQ calmodulin-binding motif | 1012 | 1026 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | Pfam | IQ calmodulin-binding motif | 1301 | 1317 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | Pfam | IQ calmodulin-binding motif | 1063 | 1079 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | Pfam | IQ calmodulin-binding motif | 991 | 1007 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | ProSiteProfiles | IQ motif profile. | 880 | 909 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | ProSiteProfiles | IQ motif profile. | 1205 | 1234 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | ProSiteProfiles | Calponin homology (CH) domain profile. | 382 | 501 | IPR001715 | GO:0005515 | |
| Pumo4g00228 | 1527 | ProSiteProfiles | IQ motif profile. | 962 | 991 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | SMART | arm_5 | 1376 | 1421 | IPR000225 | GO:0005515 | |
| Pumo4g00228 | 1527 | SUPERFAMILY | Calponin-homology domain, CH-domain | 326 | 575 | IPR036872 | - | |
| Pumo4g00228 | 1527 | CDD | CH_ASPM_rpt1 | 385 | 496 | - | - | |
| Pumo4g00228 | 1527 | Gene3D | - | 1325 | 1491 | IPR011989 | - | |
| Pumo4g00228 | 1527 | ProSiteProfiles | IQ motif profile. | 1298 | 1326 | IPR000048 | GO:0005515 | |
| Pumo4g00228 | 1527 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 1387 | 1434 | IPR000225 | GO:0005515 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo4g00228 | 948 | 1079 | Myosins gene family | AT4G33200 | 32.576 | 5.15e-09 | 59.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo4g00228 | K16743 | - | gmx:100817636 | 2715.64 |