Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00227 ATGATGCAGGCTGGACCCGGCATGGCCCAACAACCCAACCAGCAATACCCACAGCAACAGCAGCAACAACAACAACAACAACAACCCTACATGATGATGCCGCCGCAACCCCAGCCCCCTCAGATGTGGGCCCCATCGGCCCAGCCTCCGCAGCAATCGGTGGGTCCTCCGCAACCCACCAGCGCCGATGATGTCCGTACCCTCTGGATCGGCGATTTGCAGTACTGGATGGACGAAAATTATCTCTACACCTGTTTCGCACATACCGGCGAGGTGGCTTCAGTTAAAGTCATTCGGAACAAACAAACTAGTCAATCGGAGGGATATGGGTTTATTGAGTTTACTAGTCGTGCTGGTGCTGAGAGAGTCCTTCAAACATTCAATGGCACCATTATGCCAAATGGCGGGCAGAACTTCAGATTGAACTGGGCAACATTTAGTGCGGGTGAGAGGCGTCACGATGACAGCCCAGATCACACCATATTTGTTGGAGACCTGGCTGCAGATGTTACGGATTATCTTCTGCAAGAGACATTTCGGGCTCGATATCCCTCGGTTAAGGGGGCCAAAGTTGTAATTGATAGGCTAACTGGACGGACAAAGGGTTATGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAGGTTAGAGCTATGACTGAAATGCAAGGGGTTCTTTGTTCAACAAGACCCATGCGAATTGGACCAGCCTCTAATAAAAACCCTAGCACTCAGTCTCAGCCAAAAGCATCATATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACAACTATTTTTGTCGGCAATTTGGATCCTAACGTCACAGATGACCATTTGAGACAAGTTTTTGGGCAGTATGGAGAGTTAGTTCATGTGAAGATTCCAGCTGGCAAGAGATGCGGATTTGTCCAATTTGCGGACAGGAGCTGTGCAGAAGAGGCACTGCGGGTTTTAAACGGCACACTTTTGGGTGGACAAAATGTTCGGCTTTCATGGGGCCGAAGTCCTTCAAACAAACAGGCTCAACCAGATCCAAACCAGTGGAATGGTAGTGGTGGATATTATGGTTATGCTCAGGGTTATGAAAATTATGGTTATGCTCCTGCTGGACAGGACCCCAATATGTATGGCAGTTATCCAGGCTATGCAAATTACCAACCTCCCCAGCAACAGCAGCAAATAGGATATAGCTAA 1203 0.4838 MMQAGPGMAQQPNQQYPQQQQQQQQQQQPYMMMPPQPQPPQMWAPSAQPPQQSVGPPQPTSADDVRTLWIGDLQYWMDENYLYTCFAHTGEVASVKVIRNKQTSQSEGYGFIEFTSRAGAERVLQTFNGTIMPNGGQNFRLNWATFSAGERRHDDSPDHTIFVGDLAADVTDYLLQETFRARYPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNPSTQSQPKASYQNPQGAQNEHDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQPDPNQWNGSGGYYGYAQGYENYGYAPAGQDPNMYGSYPGYANYQPPQQQQQIGYS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00227 400 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 57 342 - -
Pumo4g00227 400 SUPERFAMILY RNA-binding domain, RBD 251 363 IPR035979 GO:0003676
Pumo4g00227 400 SUPERFAMILY RNA-binding domain, RBD 148 247 IPR035979 GO:0003676
Pumo4g00227 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 224 IPR000504 GO:0003723
Pumo4g00227 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 331 IPR000504 GO:0003723
Pumo4g00227 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 133 IPR000504 GO:0003723
Pumo4g00227 400 Gene3D - 245 373 IPR012677 -
Pumo4g00227 400 SUPERFAMILY RNA-binding domain, RBD 30 147 IPR035979 GO:0003676
Pumo4g00227 400 MobiDBLite consensus disorder prediction 1 63 - -
Pumo4g00227 400 MobiDBLite consensus disorder prediction 1 31 - -
Pumo4g00227 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 238 IPR000504 GO:0003723
Pumo4g00227 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 338 IPR000504 GO:0003723
Pumo4g00227 400 MobiDBLite consensus disorder prediction 32 56 - -
Pumo4g00227 400 FunFam Polyadenylate-binding protein RBP45C 151 243 - -
Pumo4g00227 400 SMART rrm1_1 267 334 IPR000504 GO:0003723
Pumo4g00227 400 SMART rrm1_1 67 142 IPR000504 GO:0003723
Pumo4g00227 400 SMART rrm1_1 160 234 IPR000504 GO:0003723
Pumo4g00227 400 MobiDBLite consensus disorder prediction 230 265 - -
Pumo4g00227 400 Gene3D - 151 244 IPR012677 -
Pumo4g00227 400 FunFam Polyadenylate-binding protein RBP45C 244 371 - -
Pumo4g00227 400 MobiDBLite consensus disorder prediction 380 400 - -
Pumo4g00227 400 MobiDBLite consensus disorder prediction 233 265 - -
Pumo4g00227 400 MobiDBLite consensus disorder prediction 386 400 - -
Pumo4g00227 400 FunFam Polyadenylate-binding protein RBP45 5 150 - -
Pumo4g00227 400 CDD RRM1_SECp43_like 67 147 - -
Pumo4g00227 400 CDD RRM2_SECp43_like 158 237 - -
Pumo4g00227 400 Gene3D - 6 150 IPR012677 -
Pumo4g00227 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 146 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00227 Pumo-Chr4 3362632 3366999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00227 265 344 Eukaryotic Initiation Factors Gene Family AT4G34110 35.632 8.14e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00227 - - gmx:100796848 667.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00227 4 3362632 3366999 Pumo2g00374 2 6617713 6621968 PCT