Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00210 ATGGATCAGCGGGCACTGGTAGTGGTAGTGGTAGTGGTAGGTAGTGGTGGTTACAACACTGTTCAGCCACCACCACCACCACCTACTAGTACTTCTAATCAGTTTCAAACATCAGCACCACCAAAACCACAATCACAGTCTCCTACCCAGAATGCGAGAACGGTGCAGAAGCCAGACACAACCATTCTGGGGAAACCCTTTGACGACATAAAAAAATACTACAGTCTGGGGAAGGAATTGGGAAGGGGCCAATTCGGGATTACGTATCTCTGCACCGAGAATTCAAGCGGTCGCACCTACGCCTGCAAGTCCATTCTGAAGAGGAAGCTGGTGTCCAAGGCCGACAGGGAGGACATGAAGAGGGAGATTCAGATCATGCAGCATTTGTCTGGTCAACCCAACATTGTCGAGTTCAAGGGCGCCTACGAGGACAGGTTTTCCGTCCACCTCGTCATGGAACTCTGCGCCGGCGGGGAGCTCTTCGACCGAATCATCGCTCAGGGTCACTACTCCGAGAGAGCCGCCGCCTCTCTCTGCCGCTCCATTGTTAACGTTCTCCACATTTGTCACTTCATGGGTGTCATGCACCGCGATCTCAAGCCCGAGAATTTCTTGCTCTCTAGCAAGGACGACGACGCTACGCTCAAGGCCACTGATTTTGGTCTCTCTGTCTTCATTGAAGAAGGTTCACATTGTATCATTTTTTATGTAGTTATCTGA 720 0.5097 MDQRALVVVVVVVGSGGYNTVQPPPPPPTSTSNQFQTSAPPKPQSQSPTQNARTVQKPDTTILGKPFDDIKKYYSLGKELGRGQFGITYLCTENSSGRTYACKSILKRKLVSKADREDMKREIQIMQHLSGQPNIVEFKGAYEDRFSVHLVMELCAGGELFDRIIAQGHYSERAAASLCRSIVNVLHICHFMGVMHRDLKPENFLLSSKDDDATLKATDFGLSVFIEEGSHCIIFYVVI 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00210 239 SUPERFAMILY Protein kinase-like (PK-like) 72 230 IPR011009 -
Pumo4g00210 239 SMART serkin_6 74 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00210 239 ProSiteProfiles Protein kinase domain profile. 74 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00210 239 MobiDBLite consensus disorder prediction 32 58 - -
Pumo4g00210 239 PANTHER SERINE/THREONINE-PROTEIN KINASE 68 227 - -
Pumo4g00210 239 FunFam Calcium-dependent protein kinase 1 76 159 - -
Pumo4g00210 239 Pfam Protein kinase domain 74 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00210 239 Gene3D Phosphorylase Kinase; domain 1 76 159 - -
Pumo4g00210 239 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Pumo4g00210 239 ProSitePatterns Protein kinases ATP-binding region signature. 80 107 IPR017441 GO:0005524
Pumo4g00210 239 Gene3D Transferase(Phosphotransferase) domain 1 160 236 - -
Pumo4g00210 239 MobiDBLite consensus disorder prediction 17 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00210 Pumo-Chr4 2467164 2467883 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00210 22 229 EF-hand Containing Proteins AT4G04720 73.558 8.26e-107 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pumo4g00210 Pkinase 5.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00210 K13412 - gmx:100812843 362.844