Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00195 ATGGCTGACTTGTTGGAATGGCCAAAGCAAGATAAGCACCGCTTGCTTCATGTCGTCTACCGTGTTGGTGACCTTGATCGCACCATCAAGTTTTACACAGAATGTTTTGGAATGAAGCTTTTGAGGCAAAGAGATATCCCAGAGGAGAAATATGCCAATGCTTTTCTTGGATTTGGCCCTGAAGAAACCCATTTTGTTGTTGAATTAACATATAATTATGGGGTTGCCTCGTATGACATTGGTGATGGCTTTGGACATTTTGCAATTGCAACTCAGGACATTTACAAATTGGTTGAGCACATCAGGGCCAAGGGTGGAAACATCACGAGGGAGCCTGGTCCAGTTCAGGGTGGGACTACTGTTATCGCCTTTGTTAAGGATCCTGATGGTTACACTTTTGGACTTATCCAAAGACCTACAGTCCATGACCCATTTTGTCAAGTAATGCTTCGTGTTGGTGATTTAGAGCGCTCAATTAAGTTTTATGAAAAGGCTTTGGGCATGAAGGTGGTGAGGAAGGTTGATAAGCCTGAGTACAAGTACACTATAGCTATGCTCGGGTATGGAGAGGAGCACGAGACAACTGTGTTGGAGTTGACATATAACTATGGTGTCACTGAATACTCTAAGGGAAATGCTTATGCACAGATTGCTATTGGCACTGATGATGTATACAAGAGTGCTGAGCTAGTTAACCAAGTCATACAAGAGGTCGGAGGGAAGATTACTCGGCAACCAGGGCCAATTCCTGGCCTTAATACAAAAATCACTTCGTTTTTAGATCCAGATGGATGGAAAACTGTCTTGGTTGACAATGTTGATTTCTTGGAGGAACTGAAGTGA 843 0.4318 MADLLEWPKQDKHRLLHVVYRVGDLDRTIKFYTECFGMKLLRQRDIPEEKYANAFLGFGPEETHFVVELTYNYGVASYDIGDGFGHFAIATQDIYKLVEHIRAKGGNITREPGPVQGGTTVIAFVKDPDGYTFGLIQRPTVHDPFCQVMLRVGDLERSIKFYEKALGMKVVRKVDKPEYKYTIAMLGYGEEHETTVLELTYNYGVTEYSKGNAYAQIAIGTDDVYKSAELVNQVIQEVGGKITRQPGPIPGLNTKITSFLDPDGWKTVLVDNVDFLEELK 280
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00195 280 FunFam Lactoylglutathione lyase 11 141 - -
Pumo4g00195 280 CDD GlxI_Ni 15 136 - -
Pumo4g00195 280 ProSitePatterns Glyoxalase I signature 1. 147 168 IPR018146 GO:0004462|GO:0046872
Pumo4g00195 280 FunFam Lactoylglutathione lyase 142 280 - -
Pumo4g00195 280 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 145 272 IPR029068 -
Pumo4g00195 280 NCBIfam lactoylglutathione lyase 14 138 IPR004361 GO:0004462|GO:0046872
Pumo4g00195 280 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 14 138 IPR037523 -
Pumo4g00195 280 PANTHER LACTOYLGLUTATHIONE LYASE 3 279 - -
Pumo4g00195 280 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 147 266 IPR004360 -
Pumo4g00195 280 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 15 133 IPR004360 -
Pumo4g00195 280 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 144 272 IPR037523 -
Pumo4g00195 280 Gene3D - 141 280 IPR029068 -
Pumo4g00195 280 Gene3D - 1 138 IPR029068 -
Pumo4g00195 280 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 13 144 IPR029068 -
Pumo4g00195 280 ProSitePatterns Glyoxalase I signature 1. 17 38 IPR018146 GO:0004462|GO:0046872
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pumo4g00195 Pumo-Chr4 2352702 2356348 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00195 147 271 Calmodulin-binding Proteins AT1G08110 28.667 6.82e-11 59.3
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00195 K01759 - gmx:100793089 558.91
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00195 4 2352702 2356348 Pumo4g00195 4 2352702 2356348 ECH
Pumo2g00356 2 6116745 6120520 Pumo4g00195 4 2352702 2356348 ECH
Pumo4g00195 4 2352702 2356348 Pumo2g00356 2 6116745 6120520 PCT