Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00178 ATGATGGGGCTTCATCGGATGCTGAAGATAAGCGTGCCAAGATCACTGAGCTGGCACGACTTGCAAGAGGACCTTCAACGCATGAGTGCAGAGAACCAAAAGCTGAAGGAGATGCTCAGCCATGTCAGCAGTAACTATACGAACTTGCAAATGCATCTTGCAGCATTACTGCAACAGCAACAGAACCAACGCACTGAGAGCACGGAACAAGAGGTTGTTCAAGGAAAAGCTGAGGAGAGAAAGCATGGAGTTGGAGGAGGAACGGTGCCTAGACAATTCCTGGATTTAGTTCCAAGTGGTACGACCGAAATAGATGATCAAGTATCTAATTCTTCTTCGGGTGAAAGGACTCGATCAAGCACACCTCCGAACAATAAAAATGATAAGGATAAGAAAGAGACTGATCCGGACTCTGAGAATTTGAACCCTTCCAACCCTACGGATCTATCCACGAGTCCGGAAGCCACTATGAGAAAAGCTCGTGTCTCAGTCCGTGCCCGATCAGAAGCACCCATGATCAGTGATGGGTGCCAATGGCGAAAATATGGACAAAAGATGGCTAAGGGAAACCCTTGTCCTCGAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAGTTCAACGTTGTGCGGAGGACAGAACAATTTTGACAACAACGTACGAAGGGACCCATAACCATCCACTGCCACCAGCTGCTATGGCCATGGCATCGACCACTGCAGCTGCGGCTAGCATGTTGTTGTCTGGGTCAATGTCCAGTGTTGATGGCATAATGAACCCCAATGTGCTAACTAGAGCTATTCTTCCTTGCTCTAGCATGGCAACACTTTCAGCTTCAGCACCATTTCCCACAGTGACATTGGACCTCACACACAACCCAAACGCGTTGCAACAGTACCAAAGACCTCAAACCCCATTCTCATCACAGCCTCAAAACTTTGTGTCTGGACTCACGCAACCTCAACTGCCGCAGCTGATTGCACAAGCGCTTTATAATCAATCCAAATTCTCAGGCCTTCAACTTTCTCAGGATGTGGGGCCTAATAATTCCCAAGCTCCAAGGCCGTTGTTGCAGCCAAGCCAACAGGTCTCGCTCGCTGACACGGTCAGTGCCATCACCGCCGACCCAAACTTCACAGCAGCACTCGCCGCCGCCATCACCTCCATCATGGGCGGTGTTAATCCAACCAACAATAACAACAACAGTAGTAGCAACCCCAATGTCATCAATAGTGCTACAATCAATGGCTTTTCAGGAAACTAA 1278 0.4875 MMGLHRMLKISVPRSLSWHDLQEDLQRMSAENQKLKEMLSHVSSNYTNLQMHLAALLQQQQNQRTESTEQEVVQGKAEERKHGVGGGTVPRQFLDLVPSGTTEIDDQVSNSSSGERTRSSTPPNNKNDKDKKETDPDSENLNPSNPTDLSTSPEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILTTTYEGTHNHPLPPAAMAMASTTAAAASMLLSGSMSSVDGIMNPNVLTRAILPCSSMATLSASAPFPTVTLDLTHNPNALQQYQRPQTPFSSQPQNFVSGLTQPQLPQLIAQALYNQSKFSGLQLSQDVGPNNSQAPRPLLQPSQQVSLADTVSAITADPNFTAALAAAITSIMGGVNPTNNNNNSSSNPNVINSATINGFSGN 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00178 425 MobiDBLite consensus disorder prediction 402 425 - -
Pumo4g00178 425 MobiDBLite consensus disorder prediction 122 138 - -
Pumo4g00178 425 ProSiteProfiles WRKY domain profile. 168 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g00178 425 Pfam WRKY DNA -binding domain 175 232 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g00178 425 SUPERFAMILY WRKY DNA-binding domain 166 234 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo4g00178 425 MobiDBLite consensus disorder prediction 102 121 - -
Pumo4g00178 425 Coils Coil 18 45 - -
Pumo4g00178 425 Gene3D WRKY domain 158 235 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo4g00178 425 MobiDBLite consensus disorder prediction 139 157 - -
Pumo4g00178 425 SMART WRKY_cls 173 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g00178 425 MobiDBLite consensus disorder prediction 71 85 - -
Pumo4g00178 425 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 19 408 IPR044810 GO:0003700
Pumo4g00178 425 MobiDBLite consensus disorder prediction 60 170 - -
Pumo4g00178 425 FunFam probable WRKY transcription factor 31 158 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00178 Pumo-Chr4 2164325 2167623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00178 21 406 WRKY Transcription Factor Family AT1G62300 56.731 6.31e-129 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo4g00178 WRKY 3.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00178 - - gmx:100127382 591.267