Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00176 ATGGCCACGTCAACCCGATCCCTCTTGCTTTCATGCTTCATGCTACACCTTGTTTCAACCTTTGTTATTGCCCATTCAACAGAGTCAGAAAACAAGTACTACAACACTCCACAACCTGTCTCAAAGTATATCCCCAAGAGTCCTAAGAAAGCATTGCTCAATGTGATAGACTCTTGCTGGCGGGCCAAACCAAATTGGGCCTCAAATCGCCAAGCCTTGGCTGATTGTGCAATTGGCTTTGGCAAAGATGCCACAGGAGGCAAATATGGTGCAATATACCGAGTCACAGATCCCTCTGATGACCCTGTAAACCCAAAACCAGGCACACTCCGTTATGGTGCAATCCAAACAGAGCCCCTCTGGATCATTTTTGACAAAGACATGGTTATTACACTAAAAAATGAGCTTATCATGAATAGCTACAAGGCCATTGATGGAAGAGGAGCAAAAGTGGAGATTACTGATGGGCCATGCATTACAATACAAGGTGTTAGTCATGTCATTATACATGGCATTAGTATCCATGATTGTAAACCAGCCAAGCCTGGCCTTGTGAAGAGTACTCCTGACCATGTTGGCCATCGTCAAGGCTCTGATGGAGATGCCATTAGCATATTTGATTCCTCCAATATTTGGATTGATCATTGTTTTTTGGCTCGTTCCACCGATGGCCTAATCGATGTTATTCATTCCTCAACTGCCATTACCATCTCTAACAATTACTTTACCCAGCATGACAAAGTTATGTTGCTAGGACATAATGACCAATATACAGCGGATAAAATAATGAGAGTAACAATAGCATTCAACCGGTTTGCCAGTGGCCTAACTGAAAGGATGCCAAGGGTAAGATTTGGTTATGCCCATGTGGTCAACAACAAATATGATGAGTGGAAAATGTATGCTATAGGCGGCAGTGCTAACCCAACCATTTTAAGTGAAGGGAATTATTATGTAGCACTAAATGACCCAAATGCAAAACAGGTTACCAAGAGGGAAGGGAAGGAAAAGTGGAAGAGTTGGAAATGGAGGTCTTCCAAGGATTTATTCCTAAATGGTGCTTATTTTGTACCATCTGGGTTTGGAAGCTGTGCCCCTAATTATTCACCTACTCAATCTTTTCCTGCTGCTCCAGCGTACATGGTGCCTGCAATAACTCTCAATGCTGGTCCCACAAATTGTGTTGTTGGGAGAGCATGTTAG 1203 0.4306 MATSTRSLLLSCFMLHLVSTFVIAHSTESENKYYNTPQPVSKYIPKSPKKALLNVIDSCWRAKPNWASNRQALADCAIGFGKDATGGKYGAIYRVTDPSDDPVNPKPGTLRYGAIQTEPLWIIFDKDMVITLKNELIMNSYKAIDGRGAKVEITDGPCITIQGVSHVIIHGISIHDCKPAKPGLVKSTPDHVGHRQGSDGDAISIFDSSNIWIDHCFLARSTDGLIDVIHSSTAITISNNYFTQHDKVMLLGHNDQYTADKIMRVTIAFNRFASGLTERMPRVRFGYAHVVNNKYDEWKMYAIGGSANPTILSEGNYYVALNDPNAKQVTKREGKEKWKSWKWRSSKDLFLNGAYFVPSGFGSCAPNYSPTQSFPAAPAYMVPAITLNAGPTNCVVGRAC 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00176 400 Gene3D - 53 393 IPR012334 -
Pumo4g00176 400 SUPERFAMILY Pectin lyase-like 54 391 IPR011050 -
Pumo4g00176 400 PANTHER PECTATE LYASE 18-RELATED 26 398 IPR045032 GO:0030570
Pumo4g00176 400 PRINTS Pollen allergen Amb family signature 135 151 IPR018082 -
Pumo4g00176 400 PRINTS Pollen allergen Amb family signature 199 220 IPR018082 -
Pumo4g00176 400 PRINTS Pollen allergen Amb family signature 341 365 IPR018082 -
Pumo4g00176 400 PRINTS Pollen allergen Amb family signature 76 93 IPR018082 -
Pumo4g00176 400 PRINTS Pollen allergen Amb family signature 279 298 IPR018082 -
Pumo4g00176 400 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Pumo4g00176 400 PRINTS Pollen allergen Amb family signature 99 124 IPR018082 -
Pumo4g00176 400 PRINTS Pollen allergen Amb family signature 371 394 IPR018082 -
Pumo4g00176 400 SMART amb_all 127 324 IPR002022 -
Pumo4g00176 400 Pfam Pectate lyase 136 318 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00176 Pumo-Chr4 2148330 2150174 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00176 10 400 Polysaccharide Lyase AT1G11920 65.306 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00176 K01728 - gmx:100807483 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00176 4 2148330 2150174 Pumo4g00176 4 2148330 2150174 ECH