Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00168 ATGATTAAGACATCTAACAGGGACATCAGTGATTATGAAAAAGCTCAGTATCTGCGATATATGATCAACTTACTCCTACCATTTTTGAAACAAATTTGTCATGAACAAAGTCAAGAGGAGCAGATTGAAGCTAAATTACTAGGAAAATCTTCTTTCAAGATTGAGATTCCCCAAAGTCTTTGTGGCGATGATGAACGTGTCTATTGTGACCATTGTGCTACTTCAATTATTGACCTTCATAGAAGCTGCCCCAATTGTTCCTATGAACTCTGCCTTAGTTGTTGCCAAGAAATACGTGATGGAAGGATTACACCCCGTGCTGAGCTGAAGTTCCCATATGTAAATAGGGGCTATGATTATATGCATGGTGGGGACCCTCTACCTGTGCCTTGTGATTTAGAGACATCAGAAGGTCATATTGAGCCGTCTACTGCGTGGAATGCTAAGAGTGATGGAAGCATTAGTTGTGCGCCAAAGGAGTTGGGGGGTTGTGGTAGTGCTGTATTGGAGCTGAGACGCATCCTCCCAGATGGGTGGATATCTGACTTGGAAGCCAAAACTCACAATATGCTGAAAATTTGGGAAATTGAACACACGACGCTTCAGCAAAAAGCAGCAGTATCAAACTACACCTCTTTGAGAAAGGAAGCTATTAGAGAAGGCATAAATGACAATAAAATATACTGTCCAGAGTCAAGTAACACTCAAAAAGAAGGGCTGTTGCTTTTCCAAAAGCATTGGGCTAATGGTGAACCAATTATAGTTCGTGATGTCCTTAAACAGGGAACAGGTCTGAGCTGGAAGCCAATGGTAATGTGGCGAGCATTATGTGAAAATATGGTTTCAGAAATCAGTTCAAAAATGTCAGAAGTGAAAGCCATCGATTGCCTTGCTAATTGTGAGGTAGAAATTGATACTCACACATTCTTTAAAGGTTATACAGAGGGAAGAACATACAGAAATCTCTGGCCAGAGATGCTCAAGCTAAAAGACTGGCCCCCCTCCGATAAATTTGAAGATCTTTTGCCCCGCCATTGTGACGAGTTTATTCGCTCCTTGCCATTTCAAGAGTACAGCGATCCTCGGGCTGGAATTCTCAATCTTGCTGTGAAGTTGCCAGCCCATGTCCTAAAACCTGACATGGGTCCAAAAACATATATTGCTTATGGGATTAAAGAAGAGCTTGGTAGAGGAGACTCTGTAACAAAGCTTCACTGTGATATGTCAGATGCGGTGAATATTTTGACCCATACAGCTGAGGTGATATTAACTGATGAGCAGCACTTTATTATATCAAAGTTGAAAGAAGCACACAAGGCACAAGATGAGAGAGAACAGTGTGCCCAAGAGAGGGTTGCTGACCGCCTGAATGATCGGCCTTGCAAAAACAACAAACAACATATAGAAAATAAGGAAGTTTTTGAAGCCAAAAGCATGAAGAAACAACCTATTGAAATTGATGGAAATATCTTTCTTAATAATGTGCCTGAGGGGTTCACTTCTCCTGAATCAATGGAAACTGGTAGTGCCCTATGGGATATCTTTCGGAGAGAGGATTCTGAAAAGTTAGAAACATATCTTAGAGAACACTCAAAAGAATTTAGACATACTTACTGTTCTCCAGTTGAACAGGTTGTACATCCAATTCATGACCAATGTTTTTATTTGACATCAGAGCACAAGAAGAAGCTGAAGGAGGAGTTTGGTGTAGAACCATGGACTTTTGAACAGAAACTTGGGGAGGCAGTATTTATTCCTGCTGGATGTCCACATCAAGTCAGGAATCTCAAGTCATGCACAAAAGTTGCTGTAGACTTTGTGTCCCCAGAAAATATCCATGAGTGTCTGCGATTAACTAACGAGTTCCGCCAGCTTCCCAAGAACCACAAGGCTAGAGAAGATAAGCTTGAGATAAAGAAGATGATAGTTTATGCTGTTGATCAAGCTGTCAAAGACTTGAAAGATTTACTGAAGTGTTCTTGA 1983 0.41 MIKTSNRDISDYEKAQYLRYMINLLLPFLKQICHEQSQEEQIEAKLLGKSSFKIEIPQSLCGDDERVYCDHCATSIIDLHRSCPNCSYELCLSCCQEIRDGRITPRAELKFPYVNRGYDYMHGGDPLPVPCDLETSEGHIEPSTAWNAKSDGSISCAPKELGGCGSAVLELRRILPDGWISDLEAKTHNMLKIWEIEHTTLQQKAAVSNYTSLRKEAIREGINDNKIYCPESSNTQKEGLLLFQKHWANGEPIIVRDVLKQGTGLSWKPMVMWRALCENMVSEISSKMSEVKAIDCLANCEVEIDTHTFFKGYTEGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRSLPFQEYSDPRAGILNLAVKLPAHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVILTDEQHFIISKLKEAHKAQDEREQCAQERVADRLNDRPCKNNKQHIENKEVFEAKSMKKQPIEIDGNIFLNNVPEGFTSPESMETGSALWDIFRREDSEKLETYLREHSKEFRHTYCSPVEQVVHPIHDQCFYLTSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENIHECLRLTNEFRQLPKNHKAREDKLEIKKMIVYAVDQAVKDLKDLLKCS 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00168 660 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 3 657 IPR045109 GO:0032454|GO:0033169
Pumo4g00168 660 Gene3D Cupin 222 632 - -
Pumo4g00168 660 ProSiteProfiles JmjC domain profile. 361 623 IPR003347 -
Pumo4g00168 660 SMART cupin_9 342 623 IPR003347 -
Pumo4g00168 660 SUPERFAMILY Clavaminate synthase-like 242 654 - -
Pumo4g00168 660 Pfam JmjC domain, hydroxylase 503 606 IPR003347 -
Pumo4g00168 660 CDD cupin_RmlC-like 547 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00168 Pumo-Chr4 2114901 2118483 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pumo4g00168 JmjC 1.7e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00168 K15601 K21989 gmx:100797860 1289.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00168 4 2114901 2118483 Pumo4g00168 4 2114901 2118483 ECH
Pumo4g00168 4 2114901 2118483 Pumo2g00330 2 5894021 5898455 PCT