Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00160 ATGACAGGTGACAACGATACCCAACATTTCCTGCATGAAGTGGAGGAAGGATGTGGTTTAATCCTTGCATTTCTTACCATAAAACCAGAGCATCAACAACTCATTATAGATGCTGGAGCCTTGCCCTGTCTTATAGATTTGTTAAGGAGGCACAAGATTAGTACCATTTCTCAGCCACTTATTGGTCTTCTAAGGAGAGCAGCTGATGCAATATTCAACCTTGCCCGCAAAAATACCATCATTAGGACCCTTGTCAGGATGGAAGGCGGTATCCCTCCTCTTGTTGAATTGCTTGAATTCAATGTCACAGAGGTACAAAGATCTGCTGCAATCGCCTTGCAAGCTCTTGCATTCGAAAATGACGACAATCAGAAGCAGATTGTTGAATGCAATGCATTACCTGCTCTTGTACTAATGCTTCGATCAGAGGATCCTACAACACGTTTCGCGGCAGTTTCTGTGATTGAAATTCTGGTCCACTCTTTACCAGATATTCGGAAAGACGTTCTTCAAGCTGGGGCTTTACAACCTGTCATTTGTTTACTTAGCGATAGTTATGTGAAGACCCAAATATTAGCAGCCTTTTTACTTGGTCTATTCGCTGCATTAGATTCAAATTGCAAGGTTCATATTTCTCAAAGAGGGGCTATTCCACCATTGATTGACATGCTTAAGTCTCCAGATGCAAAACTTCAGGAAATGTCAGCTTTTGCACTTAGGAGGTTGGCACAGGACTCACATAATCAAGCTAGTATTGCTCATAATGGAGGTATAGAGCCTTTTCTCAATCTTCTTGACTCAGACAATGCACGCATCCAAGGTGATGCTGCTTATGCTCTCTATCGTCTTGCTGATAATGAGGACGTTGTTGCAAAAATTATTAAGGCTGGTGGTTTTCAAAAATTGAAGGATGGACATTTCAGAGATCACCTTACTAAAGAGGTTGTAGCAATCACGTTAAAAAAATTGGAGAAGATGCAAGGGCAGGTGAGTTTTCTTGTAAATTCTATGTAG 1014 0.4122 MTGDNDTQHFLHEVEEGCGLILAFLTIKPEHQQLIIDAGALPCLIDLLRRHKISTISQPLIGLLRRAADAIFNLARKNTIIRTLVRMEGGIPPLVELLEFNVTEVQRSAAIALQALAFENDDNQKQIVECNALPALVLMLRSEDPTTRFAAVSVIEILVHSLPDIRKDVLQAGALQPVICLLSDSYVKTQILAAFLLGLFAALDSNCKVHISQRGAIPPLIDMLKSPDAKLQEMSAFALRRLAQDSHNQASIAHNGGIEPFLNLLDSDNARIQGDAAYALYRLADNEDVVAKIIKAGGFQKLKDGHFRDHLTKEVVAITLKKLEKMQGQVSFLVNSM 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00160 337 Pfam Armadillo/beta-catenin-like repeat 205 243 IPR000225 GO:0005515
Pumo4g00160 337 Pfam Armadillo/beta-catenin-like repeat 29 76 IPR000225 GO:0005515
Pumo4g00160 337 Pfam Armadillo/beta-catenin-like repeat 120 155 IPR000225 GO:0005515
Pumo4g00160 337 Pfam Armadillo/beta-catenin-like repeat 245 284 IPR000225 GO:0005515
Pumo4g00160 337 Gene3D - 11 164 IPR011989 -
Pumo4g00160 337 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 3 330 IPR044282 -
Pumo4g00160 337 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 39 89 IPR000225 GO:0005515
Pumo4g00160 337 SMART arm_5 245 285 IPR000225 GO:0005515
Pumo4g00160 337 SMART arm_5 120 160 IPR000225 GO:0005515
Pumo4g00160 337 SMART arm_5 78 118 IPR000225 GO:0005515
Pumo4g00160 337 SMART arm_5 162 202 IPR000225 GO:0005515
Pumo4g00160 337 SMART arm_5 28 76 IPR000225 GO:0005515
Pumo4g00160 337 SMART arm_5 204 244 IPR000225 GO:0005515
Pumo4g00160 337 SUPERFAMILY ARM repeat 18 320 IPR016024 -
Pumo4g00160 337 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 89 124 IPR000225 GO:0005515
Pumo4g00160 337 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 215 257 IPR000225 GO:0005515
Pumo4g00160 337 Gene3D - 165 323 IPR011989 -
Pumo4g00160 337 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 256 298 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00160 Pumo-Chr4 1941658 1945790 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00160 65 286 U-box Gene Family AT2G23140 28.947 9.11e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00160 - - ccaj:109817836 406.371