Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00159 ATGGAGGGTGGTTCTAACGAGGCTTCTAGTGTGATGGGTTTTGGAGAGAATATAAGTAGTAGTGGGGTTTGTCCAATGATGATGATGCCTTTAGTGACTTCTCATCATGGTGGTCATCATCCATTAAATCCTAATCTTAATAATCCCAATCCTAATGAACACACAAACACAAACACTCTCTTCCTTCCCATGCCTTGTAGTACTAATAATCACCACCCAAACCGCAATAACCACAACTCCAACGCCACTGAGTTAGGGTATTTCATGGAGATCCACAACAACAACGATGGAAGCTCCTCTTCCTCTTCTTCCTCTGTGAAGGCCAAGATCATGTCCCATCCTCACTATCACCGTCTCTTGGCAGCCTACGTCAATTGTCAAAAGGTTGGGGCTCCACCTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGCATCTGCTGCAGTGACAATGGCAGGTGGAACCGCTAGCATAGGCGAGGATCCAGCGCTGGATCAGTTCATGGAGGCTTACTGTGAGATGCTGATCAAGTACGAGCAAGAGCTCTCCAAACCCTTCAAGGAAGCCATGCTCTTTCTTCAAAGGATCGAGTGCCAGTTCAAATCTCTCACTATTTCTTCTTCTTTGGACACTGCTTGTAATGAAGCAATTGATAGGAATGGATCATGTGATGATGTTGATGTTCACAACAACAAAATAGATCCGCAGGCAGAGGACCAAGAACTGAAAGGTCAACTCTTGCGCAAGTACCGTGGATACCTTGGCAGTTTGAAGCAGGAATTCACCAAGAAGAGGAAAAAGGGCAAGCTGCCCAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGCAGACACTACAAATGGCCATACCCATCTGAATCTCAGAAACTGGCTCTTGCGGAGTCAACAGGCCTGGATCAGAAGCAAATTAACAACTGGTTTATTAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCAATTTGTGGTGGTGGATCCAAGCCATCCACACTACTACATGGAAAATGTTCTGGGCAATCCCTTTCCCATGGATCTCTCCCACACAATGCTCTAA 1077 0.4578 MEGGSNEASSVMGFGENISSSGVCPMMMMPLVTSHHGGHHPLNPNLNNPNPNEHTNTNTLFLPMPCSTNNHHPNRNNHNSNATELGYFMEIHNNNDGSSSSSSSSVKAKIMSHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAAVTMAGGTASIGEDPALDQFMEAYCEMLIKYEQELSKPFKEAMLFLQRIECQFKSLTISSSLDTACNEAIDRNGSCDDVDVHNNKIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMENVLGNPFPMDLSHTML 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00159 358 SMART ELK_2 240 261 IPR005539 GO:0003677
Pumo4g00159 358 Pfam KNOX1 domain 106 144 IPR005540 GO:0003677|GO:0005634
Pumo4g00159 358 ProSiteProfiles 'Homeobox' domain profile. 260 323 IPR001356 GO:0003677
Pumo4g00159 358 SMART KNOX1_2 104 148 IPR005540 GO:0003677|GO:0005634
Pumo4g00159 358 SUPERFAMILY Homeodomain-like 262 338 IPR009057 -
Pumo4g00159 358 ProSitePatterns 'Homeobox' domain signature. 298 321 IPR017970 GO:0000981|GO:0006355
Pumo4g00159 358 ProSiteProfiles ELK domain profile. 240 260 IPR005539 GO:0003677
Pumo4g00159 358 SMART KNOX2_2 153 204 IPR005541 GO:0003677|GO:0005634
Pumo4g00159 358 CDD homeodomain 272 324 IPR001356 GO:0003677
Pumo4g00159 358 Pfam Homeobox KN domain 280 319 IPR008422 GO:0003677|GO:0006355
Pumo4g00159 358 SMART HOX_1 262 327 IPR001356 GO:0003677
Pumo4g00159 358 Gene3D - 265 327 - -
Pumo4g00159 358 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 59 329 - -
Pumo4g00159 358 Pfam KNOX2 domain 156 203 IPR005541 GO:0003677|GO:0005634
Pumo4g00159 358 Pfam ELK domain 240 260 IPR005539 GO:0003677
Pumo4g00159 358 FunFam Homeobox protein knotted-1-like 2 265 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00159 Pumo-Chr4 1919786 1924936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00159 88 358 Homeobox Transcription Factor Family AT1G62360 77.352 6.06e-133 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pumo4g00159 KNOX2 4.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00159 - - gmx:100127401 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00159 4 1919786 1924936 Pumo2g00323 2 5822595 5831358 PCT