Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00153 ATGGGGAAATCAGGGGGTAGAAGAAAGAAGGGTGGTTCGAACCCAAACCAAGGTGGTGTTGATAATTCGGGTTCAGGTGCGGCAGCCCCAACGGCTAACGGTGGGGTGGAGGTGTTGGATTCGTCGATATTTTTGAAGAAAGCGAATGAGCTGAAAGAAGAAGGGAATAAGAGGTTTCAGAATAAGGACTATGCGGGTGCTCTTGAACAGTACGAGAGTGCTCTTCGTTTAACCCCCAAAACGCACCCTGACAGAGCCGTTTTCCACAGCAACAGGGCCGCTTGTTTGATGCAGATGAAGCCCATTGATTACGAAGCTGTCATTGCGGAGTGCACCATGGCGCTTCAGGTCCAGCCTCGCTTTGTAAGGGCACTTCTTCGCCGGGCACGGGCGTTCGAGGCCGTTGGCAAGTATGAAATGGCTGTACAAGATGTGCAGTTCTTGTTGGCAGCTGATCCTAGTAACCGCGATGCCTTGGAGATTGCTCAGAGATTGAGGACTGCGTTGGGGCCACGCCAGGAAGCCCAGCAGGACCTCCACAGTCGCCCCTCCCCGGCTGCCCTTGGTGCTTCGGCTGTCCGTGGTGCCCCTATTGCTGGATTAGGGCCTTGTTTGCCGGCCCGGCCTGTGGCAAAGAAGGGAGCAAATTCAGCAGTTGGATCTGTTGTGTCACCTAATAATAACAAGCCAGACAAGTCGCAGCCAGTTTTGCCCACTGAAAATGGTCCTGACACCAAGTCCCAGTTGCCAAAACTGGTGTTGAAGCCTTCAAATGGTTCTGCAAAGCGGACTAACCCTAAAAAGGAAGACCACAAGGAACAATCATCGACCATTCATGGGCAGCGTTCGGAGGTTGCAATTCAGTGGAGACCGTTGAAGCTTGTTTATGATCATGACATTAGGCTTGCCCAGATGCCGGTCAATTGCAGTTTTAGAGTACTAAGGGATGTAGTAAGCAAAAGATTTCCTTCGTCGAGTTCTGTTCTCATCAAGTATAAGGATTGCGATGGTGATTTGGTTACTATAACCTCTACTGATGAACTCAGACTAGCAGAGTCTAGTGTTGATAGCCATCTCGTGAAAGAACCTGGGGAAGATAAAAGTGATTCTGTTTCAATGCTGAGACTGCATATTGTTGAAGTTAGTCCGGAGCAGGAGCCACCTTTATTGGAAGAAGAGGAAGAAAAACCAGTTGAGAATGAAGGCGTCAAGGGAGAAGAGAGCGGATCTCATTCTTCTCTTGGCGAATCTGTCTCTGAAGTTGCTGATACCGAGGTTGATAAGATTGAGAAGGATGATCCAAAGGAAAAGCCGGGAACCACAGGAGATACTGAATGCAAAGAGGTGGAGATGGATGATTGGTTGTTTGAGTTTGCTCAGCTTTTCCGCTCTCATGTTGGTATTGATCCAGATGCTCATATTGACTTGCATGAGCTTGGGATGGAGCTTTGTTCTGAGGCACTTGAGGAAACAGTTACTAGTGAGGAGGCTCAGGATCTATTTGACAAGGCTGCTTCAAAGTTTCAGGAGGTGGCTGCTTTGGCTTTCTTCAACTGGGGTAATGTTCATATGTGTGCAGCTAGGAAGCGGATTCCCCTGGATGAGTCAGCTGGGAAGGAGGTAGTGGCAGAGCAGCTTCAAGTGGCTTATGAATGGGTCAAGGAAAAGTATTCTTTAGCAAGAGAGAAGTATGAGGAAGCACTCTCGATCAAACCAGACTTTTATGAGGGACTGTTGGCTCTAGGGCAGCAACAATTTGAAATGGCTAAACTTCATTGGTCTTTTGCACTTGCTAAGAAGATTGATCTATCAGGCTGGGATTCTAAGGAGACACTTCAACTTTTTGACAGTGCAGAGGAGAAGATGAAAGCTGCAACAGATATGTGGGAGAAACTGGAGGAACAGAGAGCAAAAGAGCTAAAGGACCCAAATGCAACCAAGAAAGAAGAGTTATTGAGAAGAAGAAAGAAACAAGGTGCTACTGAAGGTGAGTCCTCCAGTGTTGGAGGTCAGGGTGATATATCTGCAGAAGAAGCTGCTGAGCAAGCAGCTGTCATGAGATCACAAATTCACCTCTTCTGGGGTAATATGCTTTTCGAAAGATCCCAAGTTGAATGCAAATTGGGAATGACTGGATGGAAGGAAAACCTGGATGCTGCAACTGAACGCTTTAAGCTTGCAGGAGCTTCTGAGGCAGATATGTCGATGGTTCTAAAGAATCATTGCTCAAATGGAGATGCAAAAGATGGAGATGATAAAAAGGTTGAGAACCCATAG 2277 0.4743 MGKSGGRRKKGGSNPNQGGVDNSGSGAAAPTANGGVEVLDSSIFLKKANELKEEGNKRFQNKDYAGALEQYESALRLTPKTHPDRAVFHSNRAACLMQMKPIDYEAVIAECTMALQVQPRFVRALLRRARAFEAVGKYEMAVQDVQFLLAADPSNRDALEIAQRLRTALGPRQEAQQDLHSRPSPAALGASAVRGAPIAGLGPCLPARPVAKKGANSAVGSVVSPNNNKPDKSQPVLPTENGPDTKSQLPKLVLKPSNGSAKRTNPKKEDHKEQSSTIHGQRSEVAIQWRPLKLVYDHDIRLAQMPVNCSFRVLRDVVSKRFPSSSSVLIKYKDCDGDLVTITSTDELRLAESSVDSHLVKEPGEDKSDSVSMLRLHIVEVSPEQEPPLLEEEEEKPVENEGVKGEESGSHSSLGESVSEVADTEVDKIEKDDPKEKPGTTGDTECKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQDLFDKAASKFQEVAALAFFNWGNVHMCAARKRIPLDESAGKEVVAEQLQVAYEWVKEKYSLAREKYEEALSIKPDFYEGLLALGQQQFEMAKLHWSFALAKKIDLSGWDSKETLQLFDSAEEKMKAATDMWEKLEEQRAKELKDPNATKKEELLRRRKKQGATEGESSSVGGQGDISAEEAAEQAAVMRSQIHLFWGNMLFERSQVECKLGMTGWKENLDAATERFKLAGASEADMSMVLKNHCSNGDAKDGDDKKVENP 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00153 758 MobiDBLite consensus disorder prediction 262 278 - -
Pumo4g00153 758 ProSiteProfiles PB1 domain profile. 289 381 IPR000270 GO:0005515
Pumo4g00153 758 ProSiteProfiles TPR repeat profile. 122 155 IPR019734 GO:0005515
Pumo4g00153 758 SMART PB1_new 289 381 IPR000270 GO:0005515
Pumo4g00153 758 MobiDBLite consensus disorder prediction 219 261 - -
Pumo4g00153 758 MobiDBLite consensus disorder prediction 421 445 - -
Pumo4g00153 758 SUPERFAMILY CAD & PB1 domains 287 359 - -
Pumo4g00153 758 MobiDBLite consensus disorder prediction 635 661 - -
Pumo4g00153 758 MobiDBLite consensus disorder prediction 216 281 - -
Pumo4g00153 758 Gene3D Tetratricopeptide repeat domain 44 169 IPR011990 GO:0005515
Pumo4g00153 758 SMART tpr_5 122 155 IPR019734 GO:0005515
Pumo4g00153 758 SMART tpr_5 48 81 IPR019734 GO:0005515
Pumo4g00153 758 SMART tpr_5 541 574 IPR019734 GO:0005515
Pumo4g00153 758 SMART tpr_5 86 121 IPR019734 GO:0005515
Pumo4g00153 758 MobiDBLite consensus disorder prediction 635 674 - -
Pumo4g00153 758 MobiDBLite consensus disorder prediction 15 29 - -
Pumo4g00153 758 PANTHER PROTEIN CLMP1 1 757 IPR044517 -
Pumo4g00153 758 MobiDBLite consensus disorder prediction 1 33 - -
Pumo4g00153 758 SUPERFAMILY TPR-like 495 591 IPR011990 GO:0005515
Pumo4g00153 758 Gene3D Tetratricopeptide repeat domain 454 665 IPR011990 GO:0005515
Pumo4g00153 758 SUPERFAMILY TPR-like 45 179 IPR011990 GO:0005515
Pumo4g00153 758 Pfam PB1 domain 289 380 IPR000270 GO:0005515
Pumo4g00153 758 ProSiteProfiles TPR repeat profile. 48 81 IPR019734 GO:0005515
Pumo4g00153 758 CDD PB1 292 351 - -
Pumo4g00153 758 Gene3D - 291 361 - -
Pumo4g00153 758 Coils Coil 615 635 - -
Pumo4g00153 758 MobiDBLite consensus disorder prediction 382 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00153 Pumo-Chr4 1827666 1830841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00153 48 169 Calmodulin-binding Proteins AT3G25230 29.323 6.31e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00153 K26538 - gmx:100786963 1368.21