Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00134 ATGTCTGTCATCGAAACCCCCGCCGTCCACCACCGCAGCGGGGGCGCCACCGATCACCACCGTCACCCGTCCAAGCGCAAATTTGACGATGAAGACGACGAGGATTTCTCGGACTTAGTCTGCGTGAGGATGCGGAAGGACGAGGCCAAGGCGGTGAATTCTTGGTCCGCCTCTTCAGACGCAGACGCCGGCTGCTCCGCCTTGCAGCAGCGATCGCACATCCAGTTCTTTGTGCGAATGATGTCTGGCGGAAACACGATTGTGATGCAAGCCTTCTCCGAAGACAGCGTGAAATCGATTCACGAGCGTATCCAAAACATGAAGGGAATCCCAGTGTTTGAGCAGAGGCTAATTTATCGCGGCAAGCAGCTTCAGTGGGAACAGACACTTGCGGAGTGTTCCATTCAAAACGACGCCAACCTTCAATTAGTTGGTCGTATGCGCAGTACTGAACACCCTCAAGCGTGGCAAGTTATTGACGACATGGTTTCTCTCGTTTACCGTCTTTGCCGTGGCGAGACTGTTCACGATGCCTCGAAGACTATCAAGGGATTGATAACCAATTACTTGAACATGACTCCGAGGATTGATAACGACTCTGCCTCTGGGTACTTTCAGATTTTCATGTCTTCTTCTTCTGCCCCTGCTGTGCTTGTTATGCTCTATCTGTCCCCTTATGCAGGTAACAAGGACTGTGCTGATTCCTCTGTTAGGCACTTTTTGAGTTCCTGTCGCAATATTTTGTCTAAGGCATTGCACGGGCAGTGTGCGCGTGTGATGTTGGAGTTTTGTAAATTGCTTAGGAGAGTGGGGTGTCACGACCCTTTGTATCTCTATTGTCGGAGTACTTTTGGGTCCTTGTTGGAAACTGCTGGCGTTTCCTATGCTGGTTCTGATAATACTAAGGGGTTGGTTTTGATTCAAGATATTTTCCCCTTTGTTTGTGAGCTTGCTGAAAGCTTGTTGAGGGACTTGGACTTGAGTATGGAATCCCCCACGGCTGCGGGGCCTTTGTCGAATGATGTTGGGGATTTTTCTGCGTTCTTAATGCCTTTGAGGACTGGAATTAAGGAGCAACGAGCTGTCAAGGTTTCTATGGCTCAGGACAAATGCCATAAGGATCTCTTGCTTGCAGAAGAGATTGAATATCTTCATCGTTTGTACATTCAGTTGTTGAACAAAATTGATCAGTGCCTTCAAAAAATGAACCAGAGCTTGGCTGGCCAGGAAATGATGGAAGGGGATAATCTTTATCCTGCGTGGTCTCATTATCTTTCCATCTTGAAGGAGTTGTATCAAATTTCTAAGCTTTATGATGGTGCTGAAGAAAAGCTTTGGAAAATTTTGACGCGGCAAAGAAGTGTGGTGTGTCTGCTCATCATTCGATATGCGAAGAGAACTGACGAGCATCAGTGGATTCTTGAGCATAGGTGTGTGACTAATTTTGAGTCTAGAAGGCATCTGGCCATGATGATGTTCCCGGAGGTAAAAGAAGACTATGAGGAGTTGCACGAGATGCTTATTGACAGGTCTCAGTTATTGGCCGAGTCTTTTGAATACATAGCACGTGCTGAGCCTGAATCTCTACATGCTGGCCTGTTTATGGAATTCAAAAACGAGGAAGCTACTGGCCCAGGTGTCTTAAGGGAGTGGTTTCTTCTGGTATGTCAAGCAATATTCAATCCACAAAATGCTCTTTTTGTGGCATGCCCAAATGATCGAAGGAGATTTTTCCCTAATCCTGCATCTAAGGTACATCCTCTGCACCTTGAGTACTTCAGCTTTGCTGGTCGAGTTATTGCATTAGCATTGATGCATAGGGTGCAAGTGGGTATTGTTTTTGATCGTGTGTTTTTCTTGCAATTGGCGGGAAACTATATTGCTTTAGAAGATATAAGGGATGCAGATCCTTGTCTGTATACTAGCTGCAAACAAATATTGGATATGGATGCTGATTTCATTGATTCAGACGCATTAGGACTGACATTTGTTAGAGAGGTGGAGGAATTGGGACAGAGGAAAGTGGTTGAGCTCTGCCCTGGTGGAAAAAACCTTGTAGTTAATAGTAAGAACAGGGACAAGTATGTTGATCTTCTTATACAGGATCGCTTCGTAACATCCATATCTGAGCAGGTATCACATTTTGCCAAAGGTTTTGCAGATATTCTTTCAAACTCAAAGCTCCAGAAGTACTTCTTCCAAAGTTTAGACCTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAAGATACCATTTCTGTTGAAGATTGGAAAGCGCACACCGAGTATAATGGCTATAAAGAGACAGATATTCAGATATCTTGGTTTTGGGAGATTGTTGGAAGAATGACAGCAGATCAAAGGAAGATTCTTCTATTCTTTTGGACATCTGTAAAATACTTACCAGTTGAAGGTTTCCGTGGTTTGGCTTCCCGTCTCTACATATACAGATCCCTTGAACCTGGTGATCGCCTGCCTTCATCTCACACATGCTTTTTCCGGCTGTGTTTCCCAGCTTATTCATCTATGGCTGTCATGCAAGATCGTCTTGAAGTCATCACTCAAGAACACATTGGCTGCAGTTTTGGTACTTGGTGA 2598 0.4515 MSVIETPAVHHRSGGATDHHRHPSKRKFDDEDDEDFSDLVCVRMRKDEAKAVNSWSASSDADAGCSALQQRSHIQFFVRMMSGGNTIVMQAFSEDSVKSIHERIQNMKGIPVFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQVIDDMVSLVYRLCRGETVHDASKTIKGLITNYLNMTPRIDNDSASGYFQIFMSSSSAPAVLVMLYLSPYAGNKDCADSSVRHFLSSCRNILSKALHGQCARVMLEFCKLLRRVGCHDPLYLYCRSTFGSLLETAGVSYAGSDNTKGLVLIQDIFPFVCELAESLLRDLDLSMESPTAAGPLSNDVGDFSAFLMPLRTGIKEQRAVKVSMAQDKCHKDLLLAEEIEYLHRLYIQLLNKIDQCLQKMNQSLAGQEMMEGDNLYPAWSHYLSILKELYQISKLYDGAEEKLWKILTRQRSVVCLLIIRYAKRTDEHQWILEHRCVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLAESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFLLVCQAIFNPQNALFVACPNDRRRFFPNPASKVHPLHLEYFSFAGRVIALALMHRVQVGIVFDRVFFLQLAGNYIALEDIRDADPCLYTSCKQILDMDADFIDSDALGLTFVREVEELGQRKVVELCPGGKNLVVNSKNRDKYVDLLIQDRFVTSISEQVSHFAKGFADILSNSKLQKYFFQSLDLEDLDWMLHGSEDTISVEDWKAHTEYNGYKETDIQISWFWEIVGRMTADQRKILLFFWTSVKYLPVEGFRGLASRLYIYRSLEPGDRLPSSHTCFFRLCFPAYSSMAVMQDRLEVITQEHIGCSFGTW 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00134 865 PRINTS Ubiquitin signature 106 126 IPR019956 -
Pumo4g00134 865 PRINTS Ubiquitin signature 127 148 IPR019956 -
Pumo4g00134 865 PRINTS Ubiquitin signature 85 105 IPR019956 -
Pumo4g00134 865 MobiDBLite consensus disorder prediction 1 32 - -
Pumo4g00134 865 FunFam E3 ubiquitin-protein ligase UPL5 749 864 - -
Pumo4g00134 865 ProSiteProfiles Ubiquitin domain profile. 74 150 IPR000626 GO:0005515
Pumo4g00134 865 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 625 707 - -
Pumo4g00134 865 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 74 863 - -
Pumo4g00134 865 SMART hect_3 523 863 IPR000569 GO:0004842
Pumo4g00134 865 SUPERFAMILY Ubiquitin-like 74 162 IPR029071 -
Pumo4g00134 865 Gene3D Hect, E3 ligase catalytic domain 625 707 - -
Pumo4g00134 865 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 67 162 - -
Pumo4g00134 865 Pfam Ubiquitin family 77 148 IPR000626 GO:0005515
Pumo4g00134 865 CDD HECTc 504 863 IPR000569 GO:0004842
Pumo4g00134 865 Gene3D Hect, E3 ligase catalytic domains 505 730 - -
Pumo4g00134 865 SMART ubq_7 74 146 IPR000626 GO:0005515
Pumo4g00134 865 SUPERFAMILY Hect, E3 ligase catalytic domain 500 850 IPR035983 GO:0004842
Pumo4g00134 865 Gene3D Hect, E3 ligase catalytic domain 748 864 - -
Pumo4g00134 865 ProSiteProfiles HECT domain profile. 525 865 IPR000569 GO:0004842
Pumo4g00134 865 Pfam HECT-domain (ubiquitin-transferase) 554 857 IPR000569 GO:0004842
Pumo4g00134 865 Gene3D - 67 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00134 Pumo-Chr4 1693184 1701669 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00134 74 148 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 41.333 7.29e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00134 - - gmx:100789233 1613.97