Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00133 ATGCGTCAGGACGAGGCCAAGGCGGTGAATTCCTCCGGCGCCTTGCAGCAGCGATCGTACATTCAGTTCTTCGTGCGAATGATGTCCGGCGGAAACACGATTGTGATACAGGCATTCCCCGAAGACAGTGTCAAATCGATTTACGAGCGAATCCAAAGCATGACGGGAATCCCAGTGTTCGAGCAGAGGCTAATTTATCGCGGGAGAGAGCTTCAGTGGGAACAAACTCTCGCCGAGTGTTCCATTCAAAACGACGCCAACCTTCAATTAGTTGGTCGTATGCGCAGTACTGAACACCCTCAAGCGTGGCAAGTTATTGACGACATGGTTTCTCTCGTTTACCGTCTTTGCCATGGCGAGACTGTTCACGATGCCTCGAAGACTATCAAGGGATTGATCACCAGTTACTTGAACATGACTCCGAGGATTGATAACGACTCTGCCTCTGGGTACTTTCAGATTTTCATGTCTTCTTCTGCCCCTGCTGTGCTTGTTATTCTCTATGTGTCCCCTTATGCAGGTAACAAAGACTGTGCTGATTCCTCTGTTAGGCACTTTTTGAGTTCCTGTCGCAATACTTTGTCGCACGGGCAGTGTGCGCGTGTGATGTTGGAGTTTTGTAAATTGCTTAGGAGAGTGGGGTGTCACGACCCTTTGTATCTCTATTGTCGGAGTACTTTTGGGTCCTTGTTGGAAACTACTGGGGTTTCCTATGCTGGTTCTCATAATGTTAAGGGGTTGGTTTTGATTCAAGATATTTTCCCCTTTGTTTGTGAGCTTGCTGAAAGCTTGTTGAGGGATTTGGACTTGAGTATGGAATCCCCCATTGCTGCGGGGCCTTTGTCAAACGATGTTGGGGATTTTACTGCGTTCTTAAAACCTTTGAGGACTGGAATTAAGGAGCAACAAGCTGTCAAGGATTCTATGGCTCAAGACAAACGCCAAAAGGATCTATTGCTTGCAGAAGAGATTGAATATCTTCATCGTTTGTACATTCAGTTGTTGAACAAAATTGATCAGTGCCTTCAAAAAATGGACCAAAGCTTGGCTGGCCAGGAAATGAAGGAAGGGGATAATCTTTATCCTGCGTCGTCTCAATATCTTTCCATCTTGAAGGAGTTGTATCAAATTTCTAAGCTTTATGATGGTGCTGAAGAAAAGCTTTGGGGTGTTTTGACGCGGCAAAGAAGTGTGCTGTGTCTGCTGATTGTTCGATATGCGAAGAGAACTGATGAGCATCAGTGGATTCTGGAGCGTAGGTGTGTAACCAATTTTGAGTCTAGAAGGCATTTGGCCATGATGATGTTCCCGGAGGTAAAAGAAGAGTACGAGGAGTTGCATGAGATGCTTATTGACAGGTCTCAGTTATTGGCTAGGTCTTTTGAATACATAGCTCATGCCGAGCCTGAATCTCTACTTGCCGGCCTGTTTATGCAATTCAATAACGAGGAAGCTACTGGCCCAGGTGTACTAAGGGAGTGGATTCTTCTGGTATGTCAAGCAATTTTCAATCCACAAAATGCTCTTTTTGTTGCATGCCCAAATGATCAAAGGAGATTTTTCCCTAATCCTGCATCAAAGGTACATCCTCTGCACCTTGAGTACTTCAGCTTCGCTGGTCGAGTTATTGCATTAGCTTTGATGCATAGGGTGCAAGTGGGTATTGTTTTTGATCGTGTGTTTTTCTTGCAATTGGCTGGAAACTATATTGCTTTAGAAGATATAAGGGATGCAGATCCTTATCTGTATACTAGCTGCAAGCAAATATTGGATATGGATGCTGATTTCATTGATTCAGATGCATCAGGACTGAGATTTGTTAGAGAGGTGGAGGAATTAGGACAGAGGAAAGTGGTTGAGCTCTGCCGTGGTGGAAAAAACCTTGTAGTTAATAGTAAGAACAGGGACAAGTATGTTGATCTTCTTATACAGAATCGCTTCGTAACATCCATATCTGAGCAGGTATCACATTTTGCCAAAGGTTTTGCAGACATTCTTTCAAACTCAAAGCTCCAGAAGTACTTCTTCCAAAGTTTAGACCTTGAAGACCTTGACTGGATGTTGCATGGGAGTGTTTCCTAG 2082 0.4428 MRQDEAKAVNSSGALQQRSYIQFFVRMMSGGNTIVIQAFPEDSVKSIYERIQSMTGIPVFEQRLIYRGRELQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQVIDDMVSLVYRLCHGETVHDASKTIKGLITSYLNMTPRIDNDSASGYFQIFMSSSAPAVLVILYVSPYAGNKDCADSSVRHFLSSCRNTLSHGQCARVMLEFCKLLRRVGCHDPLYLYCRSTFGSLLETTGVSYAGSHNVKGLVLIQDIFPFVCELAESLLRDLDLSMESPIAAGPLSNDVGDFTAFLKPLRTGIKEQQAVKDSMAQDKRQKDLLLAEEIEYLHRLYIQLLNKIDQCLQKMDQSLAGQEMKEGDNLYPASSQYLSILKELYQISKLYDGAEEKLWGVLTRQRSVLCLLIVRYAKRTDEHQWILERRCVTNFESRRHLAMMMFPEVKEEYEELHEMLIDRSQLLARSFEYIAHAEPESLLAGLFMQFNNEEATGPGVLREWILLVCQAIFNPQNALFVACPNDQRRFFPNPASKVHPLHLEYFSFAGRVIALALMHRVQVGIVFDRVFFLQLAGNYIALEDIRDADPYLYTSCKQILDMDADFIDSDASGLRFVREVEELGQRKVVELCRGGKNLVVNSKNRDKYVDLLIQNRFVTSISEQVSHFAKGFADILSNSKLQKYFFQSLDLEDLDWMLHGSVS 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00133 693 ProSiteProfiles Ubiquitin domain profile. 21 97 IPR000626 GO:0005515
Pumo4g00133 693 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 21 691 - -
Pumo4g00133 693 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 14 109 - -
Pumo4g00133 693 ProSiteProfiles HECT domain profile. 468 693 IPR000569 GO:0004842
Pumo4g00133 693 SUPERFAMILY Hect, E3 ligase catalytic domain 444 688 IPR035983 GO:0004842
Pumo4g00133 693 Gene3D Hect, E3 ligase catalytic domain 568 650 - -
Pumo4g00133 693 PRINTS Ubiquitin signature 32 52 IPR019956 -
Pumo4g00133 693 PRINTS Ubiquitin signature 74 95 IPR019956 -
Pumo4g00133 693 PRINTS Ubiquitin signature 53 73 IPR019956 -
Pumo4g00133 693 Pfam HECT-domain (ubiquitin-transferase) 497 672 IPR000569 GO:0004842
Pumo4g00133 693 Gene3D - 15 116 - -
Pumo4g00133 693 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 568 650 - -
Pumo4g00133 693 Pfam Ubiquitin family 24 95 IPR000626 GO:0005515
Pumo4g00133 693 SUPERFAMILY Ubiquitin-like 21 109 IPR029071 -
Pumo4g00133 693 SMART hect_3 466 693 IPR000569 GO:0004842
Pumo4g00133 693 SMART ubq_7 21 93 IPR000626 GO:0005515
Pumo4g00133 693 Gene3D Hect, E3 ligase catalytic domains 450 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00133 Pumo-Chr4 1686336 1689479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00133 21 95 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 37.333 1.40e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00133 - - gmx:100796470 1234.17