Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00111 ATGCAAACGTCTCAGAAGCACCCAAGCTCAGCTGGTGTCCATTTCTATCACCAGCCTGTGCAAAGCATTTACCAAATGTTGCAAAGCAATCTAAGCCATGATGCTCATGATAGCAGCAGCCAGGGAACTAGTGTTTCTTTTGAAACCTGCAAGGAGCAATACTTTACTCTGGAATCATGCCCAGCACCCACTACTGGTTTCATGGATTGTGATGATTCTCCTTCCTATGCCAGTGTATCATCTAAAAGGACTCCATTTTCTCCACAAGGTTCTCAGTCATGCTATTCAGATCACCACCAGTCCCCTGACAACACTTATGGTTCGCCAATAAGCGGGTTGTCTAGTGTTGATGACGGGCATGAACTGATGAAGCACAAGCTTAGAGAACTGGAGATTTCATTGTTGGGGCCTGAAGAATTAGACATTACAGACAGTTGCGGCTGCTGCATCGTCAAGGGTGGTCTCCATGGATCATCTCAGTTGGCTAAACATAACTGGGATCAGATTGCCAAAAATATTCCACAATTTGACTTGAAAGGAGTCCTCAAGGTATGTGCACAGGCAGTGTCTGATGATGATATTCCAACAGCAAGAGGCTGGATGGATAATGTATTGGGGAAAATGGTATCAGTCTCTGGAGATCCAATCCAGAGGTTGGGTGCTTACTTGTTGGAGGGGCTTAGAGCAAGGTTGGAATCATCTGGGAATCTCATCTACAAATCCTTGAAGTGTGAACAACCAACAAGCCAAGAACTAATGAGTTACATGCACATCCTCTACCAGATTTGCCCATACTGGAAGTTTGCATACATATCTGCAAATGCTGTCATTACAGAAGCAATGGCAAATGAGTCCAGGATTCATATAATTGATTTCCAAATTGCGCAGGGCACGCAGTGGCATTTACTTATCCAGGCTCTTGCACATAGGCCTGGGGGACCCCCCTCCCTTCGTGTGACTGGTGTTGATGATTCACAGTCGATTCATGCACGTGGTGGAGGACTTCAGATTGTAGGAGAAAGGCTTTCAGATTTTGCCAGGTCTTGTGGAGTTCCATTTGAATTCCACAGTGCTGCAATATCTGGCTGTGAGGTTGTACGAGGAAATATTGAAATTCAACCCGGGGAAGCTCTGGCTGTAAATTTTCCCTATGTTTTGCACCACATGCTAGATGAGAGTGTGAGCACTGAGAATCATAGAGATAGATTGTTGAGGTTGGTTAAGAGCTTGTCTCCCAAGGTTGTTACCCTTGTTGAGCAAGAATCCAACACCAACACTTCTCCTTTCTTTCACAGGTTTGTTGAGACCCTGGATTATTATACTGCAATGTTTGAATCCATAGATGTGGCTTGCCCCAGAGATGATAAGAAGCGGATTAGTGCAGAGCAGCACTGTGTGGCACGAGACATCGTCAACATGATAGCCTGTGAGGGGGTTGAGAGGGTGGAGAGGCATGAACTTTTGGGAAAGTGGAGGTCAAGATTTTCCATGGCTGGATTTAAACAGTGTCAATTGAGTTTTTCAGTGATGGTTGATACCCAAAATCTCCTAAAAGAGTTCAGTCAAAATTATAGGCTTGAACATAGAGATGGTGCACTTTATCTTGGCTGGATGAACAGACATATGGCCACATCTTCTGCTTGGAGGTGA 1650 0.4485 MQTSQKHPSSAGVHFYHQPVQSIYQMLQSNLSHDAHDSSSQGTSVSFETCKEQYFTLESCPAPTTGFMDCDDSPSYASVSSKRTPFSPQGSQSCYSDHHQSPDNTYGSPISGLSSVDDGHELMKHKLRELEISLLGPEELDITDSCGCCIVKGGLHGSSQLAKHNWDQIAKNIPQFDLKGVLKVCAQAVSDDDIPTARGWMDNVLGKMVSVSGDPIQRLGAYLLEGLRARLESSGNLIYKSLKCEQPTSQELMSYMHILYQICPYWKFAYISANAVITEAMANESRIHIIDFQIAQGTQWHLLIQALAHRPGGPPSLRVTGVDDSQSIHARGGGLQIVGERLSDFARSCGVPFEFHSAAISGCEVVRGNIEIQPGEALAVNFPYVLHHMLDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFHRFVETLDYYTAMFESIDVACPRDDKKRISAEQHCVARDIVNMIACEGVERVERHELLGKWRSRFSMAGFKQCQLSFSVMVDTQNLLKEFSQNYRLEHRDGALYLGWMNRHMATSSAWR 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00111 549 MobiDBLite consensus disorder prediction 78 111 - -
Pumo4g00111 549 Pfam GRAS domain family 181 549 IPR005202 -
Pumo4g00111 549 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 111 539 IPR005202 -
Pumo4g00111 549 ProSiteProfiles GRAS family profile. 169 549 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00111 Pumo-Chr4 1464776 1468422 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00111 1 549 GRAS Transcription Factor Family AT4G17230 60.291 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pumo4g00111 GRAS 3.6e-125 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00111 - - gmx:100776109 1038.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00111 4 1464776 1468422 Pumo2g00268 2 5180181 5184193 PCT