Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00100 ATGTCAGAGCTGTTGAAAAACCCAAGAGTGATGAAAAAGGCACAGGCTGAAATAAGAGAAGCCTTTAGGGGAAAGAAAACAATTCGCGAGAGTGATGTATATGAACTTAACTACTTGAAGTCAGTGATCAAAGAAACCATGAGGTTACATCCACCTGTTCCTTTGTTGCTCCCAAGAGAATGCAGGGAACCATGCAAGATAGGTGGATATGAAATACCTATCAAAACTAAAGTGATTGTAAATGCATGGTCACTTGGGAGAGATCCCAAGCATTGGTATGATGCAGAGAAGTTTATACCTGAGAGGTTTGATGGCACAGGTTTTGATTTTAAAGGGAATAATTTTGAGTACATCCCTTTTGGGGCAGGAAGGAGAATATGTCCTGGCATTTTGCTTGGCATAGCTAATGTTGAGCTCCCTCTAGCTGCATTGGTGTATCACTTTGACTGGGAACTCCCCAATGGAATGAAACCAGAGGACTTGGATATGACTGAATCCTTTGGAGCTGCAGTGGGAAGGAAAAACAACCTATATTTGATACCTACTATGTATGACCATTCCCTTAATCATGTCATTGTCAATTGA 585 0.4103 MSELLKNPRVMKKAQAEIREAFRGKKTIRESDVYELNYLKSVIKETMRLHPPVPLLLPRECREPCKIGGYEIPIKTKVIVNAWSLGRDPKHWYDAEKFIPERFDGTGFDFKGNNFEYIPFGAGRRICPGILLGIANVELPLAALVYHFDWELPNGMKPEDLDMTESFGAAVGRKNNLYLIPTMYDHSLNHVIVN 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00100 194 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 120 129 IPR017972 GO:0005506|GO:0016705
Pumo4g00100 194 PANTHER OS08G0105600 PROTEIN 1 185 - -
Pumo4g00100 194 Pfam Cytochrome P450 3 170 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo4g00100 194 PRINTS P450 superfamily signature 118 127 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo4g00100 194 PRINTS P450 superfamily signature 6 19 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo4g00100 194 PRINTS P450 superfamily signature 41 52 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo4g00100 194 Gene3D Cytochrome P450 1 176 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo4g00100 194 FunFam Predicted protein 1 179 - -
Pumo4g00100 194 SUPERFAMILY Cytochrome P450 1 181 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo4g00100 194 PRINTS E-class P450 group I signature 81 105 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo4g00100 194 PRINTS E-class P450 group I signature 127 150 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo4g00100 194 PRINTS E-class P450 group I signature 117 127 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo4g00100 194 PRINTS E-class P450 group I signature 40 58 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00100 Pumo-Chr4 1364699 1365283 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00100 1 184 Cytochrome P450 AT3G26300 54.348 5.40e-69 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00100 - - gmx:100794503 375.555