Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00095 ATGGGTGATGATGAGAGTCGACAATCATTGCTTTCAGAATCAAGAGATCATTCTCATCTCAATGAGAAAAGTGACCTCCTGAGGAGAAGGCCTCAGCGTGGTAATTCTTCAGAGAAAGAGAACCTCCAAGAACAAAATGTGGTCCAAAGCCCTTTACACTGTCAATATATAGATCCAAAACAACAAGCAGAATTCAATTTCAAGACAGTGTTATTGTGGTTAGCTGCCTACCTAGGTGGAGGAACACTATGCTTCCTTCTCACAAGTCATCAGATCAAGGGCATAAAAACCAATGGGTTTCTTGATGCCATTTACTTCTGTGTTGTGACAATGACTACTGTTGGATATGGAGATCTTGTGCCAGATAGCCAATTGGCAAAACTTCTTGCCTGCATTTATGTCTTCTCGGGCATGGCTCTGGTAGGGTTCATTCTTAGCAAGGCAGCAGATTACATTGTTGAAAAGCAGGAAATACTTCTAGTTAGCACCTTATTCAAGGGTCAAAATTTTGGTCCAGAAGAGCTTTCCAAAGAGGTTCAAACTAACAAAGCTAAATACAAATTCATTCTGACAGCATCCATCTTTTTGGTGCTTATGATTGCAGGGACTGTTTTTCTGTATTTTATCGAAAATCTAGATTTTGTTGATGCCCTCTATTGTGTTTGTTCCACAGTCACTACTTTAGGTTATGGGGATAAGAGCTTCTCCACTACTATTGGTCGTGCTTTTGCTGTGTTCTGGATATTAAGCAGCACCATTTGCTTAGCTCAGTCTTTTGCTTATCTTGCTGAATTTTATACTGAAGAAAGACAAAAATCAATGGCAAAAATGGTTCTTACACGAAAGTTGTCAATCCTTGATCTTGAGGCGGCTGATCTTGATGGAGACCATGTTGTCAGTGCCACAGAGTTCGTATTATACAAGTTGAAGGAAATGGGAAAGATCAACCAAGAAGATATTTTAGTTGTGTTGGATATTTTTAGAAAACTAGATTTTGATAAATCAGGAACCCTGACAGAAGCTGATCTCAAATATTCTGAATCATCTTAA 1050 0.3895 MGDDESRQSLLSESRDHSHLNEKSDLLRRRPQRGNSSEKENLQEQNVVQSPLHCQYIDPKQQAEFNFKTVLLWLAAYLGGGTLCFLLTSHQIKGIKTNGFLDAIYFCVVTMTTVGYGDLVPDSQLAKLLACIYVFSGMALVGFILSKAADYIVEKQEILLVSTLFKGQNFGPEELSKEVQTNKAKYKFILTASIFLVLMIAGTVFLYFIENLDFVDALYCVCSTVTTLGYGDKSFSTTIGRAFAVFWILSSTICLAQSFAYLAEFYTEERQKSMAKMVLTRKLSILDLEAADLDGDHVVSATEFVLYKLKEMGKINQEDILVVLDIFRKLDFDKSGTLTEADLKYSESS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00095 349 MobiDBLite consensus disorder prediction 1 37 - -
Pumo4g00095 349 SUPERFAMILY EF-hand 288 345 IPR011992 -
Pumo4g00095 349 Gene3D - 54 162 - -
Pumo4g00095 349 MobiDBLite consensus disorder prediction 1 44 - -
Pumo4g00095 349 ProSitePatterns EF-hand calcium-binding domain. 331 343 IPR018247 -
Pumo4g00095 349 SUPERFAMILY Voltage-gated potassium channels 182 285 - -
Pumo4g00095 349 FunFam Calcium-activated outward-rectifying potassium channel 1 64 159 - -
Pumo4g00095 349 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 70 320 IPR003280 GO:0005267|GO:0016020|GO:0071805
Pumo4g00095 349 Gene3D - 273 348 - -
Pumo4g00095 349 PRINTS Two pore domain K+ channel signature 109 137 IPR003280 GO:0005267|GO:0016020|GO:0071805
Pumo4g00095 349 PRINTS Two pore domain K+ channel signature 226 235 IPR003280 GO:0005267|GO:0016020|GO:0071805
Pumo4g00095 349 Gene3D - 172 272 - -
Pumo4g00095 349 SUPERFAMILY Voltage-gated potassium channels 63 154 - -
Pumo4g00095 349 Pfam Ion channel 75 153 IPR013099 -
Pumo4g00095 349 Pfam Ion channel 194 267 IPR013099 -
Pumo4g00095 349 ProSitePatterns EF-hand calcium-binding domain. 292 304 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00095 Pumo-Chr4 1349994 1353229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00095 49 349 Ion Channels AT5G55630 55.482 3.37e-119 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00095 K05389 - gmx:100799492 631.713