Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00081 ATGGAACCTGGAGGCTTTCATGGCTACCGCAAGCTCCCCAACACCACCTCTGGGTTGAAGCTGTCAGTGTCAGACATGAACATGAGGCAGCAGCAGCAGGTAGCATCATCAGAGAACAACCACACAGCAGAGGAGAACGAATGCACGGTTAGGGAGCAAGACAGGTTCATGCCAATCGCGAACGTGATAAGGATCATGCGCAAGATTCTCCCTCCACACGCAAAAATCTCCGACGATGCGAAAGAGACAATCCAAGAATGCGTGTCGGAGTACATCAGCTTCATCACTGGGGAGGCGAACGAGCGTTGCCAGAGGGAGCAGCGCAAGACCATAACCGCAGAGGACGTGCTTTGGGCCATGAGCAAGCTTGGATTCGACGACTACATCGAACCACTGACCATGTACCTTCACCGCTACCGTGAACTCGAGGGTGACCGCACCTCTATGAGGGGTGAACCACTGGGGAAGAGGACCGTTGAATACGCCACTCTTGGGGTTGCTACTGCTTTTGTGCCACCACCCTTTCACCCCAATGGGTACTTTGGTCCTGCCATGGGGACTTACGTTAGGGAAGCCCCACCAAATGCTGCGTCCTCTCATCACCACCATGGAATCTCCAATGAACCAAATGCACGCTCCATATAA 645 0.5364 MEPGGFHGYRKLPNTTSGLKLSVSDMNMRQQQQVASSENNHTAEENECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTSMRGEPLGKRTVEYATLGVATAFVPPPFHPNGYFGPAMGTYVREAPPNAASSHHHHGISNEPNARSI 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00081 214 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 56 120 IPR003958 -
Pumo4g00081 214 ProSitePatterns NF-YB/HAP3 subunit signature. 87 103 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pumo4g00081 214 MobiDBLite consensus disorder prediction 200 214 - -
Pumo4g00081 214 SUPERFAMILY Histone-fold 53 152 IPR009072 GO:0046982
Pumo4g00081 214 Gene3D Histone, subunit A 41 161 IPR009072 GO:0046982
Pumo4g00081 214 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 33 191 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pumo4g00081 214 Coils Coil 27 47 - -
Pumo4g00081 214 PRINTS CCAAT-binding transcription factor subunit A signature 122 140 - -
Pumo4g00081 214 PRINTS CCAAT-binding transcription factor subunit A signature 103 121 - -
Pumo4g00081 214 PRINTS CCAAT-binding transcription factor subunit A signature 84 102 - -
Pumo4g00081 214 MobiDBLite consensus disorder prediction 28 43 - -
Pumo4g00081 214 FunFam Nuclear transcription factor Y subunit B-6 45 161 - -
Pumo4g00081 214 MobiDBLite consensus disorder prediction 192 214 - -
Pumo4g00081 214 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00081 Pumo-Chr4 1195060 1197021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00081 1 146 CCAAT-HAP3 Transcription Factor Family AT5G47670 75.163 3.25e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pumo4g00081 CBFD_NFYB_HMF 5.9e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00081 K08065 - gmx:100194424 379.407