Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00073 ATGAAACGCCCAAACGACGACGTCCCCGCCACGAAGCCACTGTTCCTAACCAAAGCCCAACGCGAGCAATTGGCCCTCCAACGCCGCCAGGAACAAGTTGAGGAGCAGAAGCGCCGCCAGGAGCAGCTCCTCTCCCGCAACCACCACTCCGATCCCAAACCCTCCTCCGACCGCGACAGAGACAGAGACAGGGACAGAGACAGAGACCGAGACAGAGACCGTGACAGAGAACGCGAGCGCGAGAGGGCACGGGATCGGGACCGCGAAGCCGAAAGGCGCAACAGAGAGAGGGAGCGCGAAGAGGAGACCCGGGCCCGCGAACGCGCCCGCTTGGAGAAGCTCGCGGAGCGTGAGCGCGAGAAGGAGCTGGATTCGATAAAGGAGCAGTACCTGGGCTCAAAAAAGCCCAAGAAGCGCGTCATCAAGCCCAGCGAGAAGTTCCGGTTCTCGTTCGACTGGGAGAACACTGAGGACACCTCGCGTGACATGAACTCCCTCTACCAGAATCCCCACGAGGCCCAGCTCCTCTTCGGCCGCGGCTTCCGCGCGGGCATGGACCGGCGCGAGCAGAAGAAGCTGGCCGCCAAAAACGAGAAGGAGATGCGCGAGCAAATCCGCAAGAAAGACGGCCTCGAAGAGAAGCCCGAGGAGGCCGACGCCCTGCGCCGCAAGGAGGCCGCCGCCGACCTCTACGACACCTTCGACATGCGCGTGGACCGCCACTGGAGCGAGAAGAAGCTGGAAGAGATGACCGAAAGGGATTGGCGTATCTTCAGAGAAGACTACAACATCTCCTACAAGGGTTCCAAGATCCCTCGCCCTATGAGAAGCTGGAATGAGAGCAAGTTGACCCTCGAGCTTTTGAAGGCTGTGGAGAAGGCTGGCTATAAAACCCCTTCTCCTATTCAGATGGCAGCTATCCCCCTTGGTTTGCAGCAGCGTGATGTCATTGGCATTGCCGAGACCGGTTCCGGGAAAACCGCCGCCTTTGTGCTTCCCATGTTGAGTTACATCACCAGGCTTCCTCCCATTAGTGAGGACAATGAGGCTGAGGGTCCCTATGCTGTTGTCATGGCCCCCACTCGCGAGCTTGCACAGCAGATTGAGGATGAGACTGTTAAGTTTGCTCAGTATTTGGGCATCAAGGTGGTCTCCATTGTTGGTGGACAGTCCATTGAGGAGCAAGGGTTTAAGATTAGGCAGGGCTGCGAGATTGTGATTGCCACTCCTGGACGTTTGATTGATTGTTTGGAGCGGCGCTATGCTGTGCTCAACCAGTGCAATTATGTTGTTCTTGATGAGGCGGATCGTATGATTGACATGGGGTTTGAGCCCCAGGTGATGGGCGTCCTTGATGCCATGCCTTCCAGCAATCTCAAGCCGGAGAACGAGGATGAGGAGCTTGATGAGAAGAAGATTTACCGGACCACCTATATGTTCAGCGCCACCATGCCGCCTGCTGTGGAGAGGCTTGCCAGGAAATATTTGAGGAACCCTGTTGTGGTCACCATTGGCACTGCTGGAAAGACAACTGATTTGATCAGCCAGCATGTCATCATGATGAAGGAATCCGAGAAATTTTACAAGCTTCAGAGGTTGCTTGATGAGCTTAACGACAAGACTGCGATTGTCTTTGTTAACACCAAGAAGAATGCGGATATGGTTGCCAAGAATTTGGATAAGGAAGGGTATCGCGTGACTACTTTGCATGGAGGGAAGTCGCAGGAGCAGAGGGAGATTAGTCTTGAAGGGTTTAGGACCAAGAGATATAATGTTCTTGTTGCTACTGATGTTGCTGGACGTGGGATTGACATACCGGATGTGGCTCATGTCATCAACTATGATATGCCTGGGAATATTGAAATGTACACGCACCGTATTGGGCGCACTGGTCGTGCAGGAAAGACGGGTGTGGCTACAACATTCTTGACTCTTCATGACACTGATGTCTTTTATGACCTCAAGCAGATGCTTATTCAGAGTAATAGTCCTGTTCCACCTGAACTGGCAAGGCATGAAGCTTCAAAATTCAAGCCAGGAACTATTCCAGACAGACCACCTAGACGAAATGACACTGTTTTTGCACATTAG 2091 0.538 MKRPNDDVPATKPLFLTKAQREQLALQRRQEQVEEQKRRQEQLLSRNHHSDPKPSSDRDRDRDRDRDRDRDRDRDRERERERARDRDREAERRNREREREEETRARERARLEKLAEREREKELDSIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKDGLEEKPEEADALRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWNESKLTLELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEDNEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMKESEKFYKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTIPDRPPRRNDTVFAH 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00073 696 Coils Coil 80 124 - -
Pumo4g00073 696 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 529 673 IPR001650 -
Pumo4g00073 696 SMART ultradead3 295 517 IPR014001 -
Pumo4g00073 696 MobiDBLite consensus disorder prediction 671 696 - -
Pumo4g00073 696 Pfam DEAD/DEAH box helicase 301 491 IPR011545 GO:0003676|GO:0005524
Pumo4g00073 696 Gene3D - 507 694 IPR027417 -
Pumo4g00073 696 Coils Coil 188 214 - -
Pumo4g00073 696 MobiDBLite consensus disorder prediction 24 135 - -
Pumo4g00073 696 Coils Coil 16 46 - -
Pumo4g00073 696 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 431 439 IPR000629 -
Pumo4g00073 696 Gene3D - 237 506 IPR027417 -
Pumo4g00073 696 MobiDBLite consensus disorder prediction 664 696 - -
Pumo4g00073 696 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 307 502 IPR014001 -
Pumo4g00073 696 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 276 304 IPR014014 GO:0003724
Pumo4g00073 696 CDD SF2_C_DEAD 514 643 - -
Pumo4g00073 696 SMART helicmild6 553 634 IPR001650 -
Pumo4g00073 696 Pfam Helicase conserved C-terminal domain 528 634 IPR001650 -
Pumo4g00073 696 MobiDBLite consensus disorder prediction 1 139 - -
Pumo4g00073 696 MobiDBLite consensus disorder prediction 188 219 - -
Pumo4g00073 696 FunFam probable ATP-dependent RNA helicase DDX23 237 506 - -
Pumo4g00073 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 655 IPR027417 -
Pumo4g00073 696 CDD DEADc_DDX23 287 503 - -
Pumo4g00073 696 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 205 673 - -
Pumo4g00073 696 FunFam probable ATP-dependent RNA helicase DDX23 507 695 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00073 Pumo-Chr4 1116980 1119288 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00073 274 656 Eukaryotic Initiation Factors Gene Family AT3G19760 32.292 9.57e-63 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00073 K12858 - gmx:100792810 1139.02