Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00065 ATGGTGAGTATTTGTTCTTCTCCGACGAGAGTGAAACGTATTTGTGGTGGCTGTAATTTTTGTTTATTATTGTTACATTTGCAGGCAGACGTTGAGGTTGATGTGGCGGCGGCGGCAGGGCAGCCGAAGAAGAGAACGTTCAAGAAGTTCAGTTTCAGGGGCGTGGATCTGGACGCACTTCTGGACATGTCCACTGATGAACTCGTGAAGCTCTTCAGTGCCCGTGCACGTAGAAGGTTCCAGAGAGGTCTCACCAGAAAGCCCATGGCTTTGATTAAGAAGCTCCGCAAAGCGAAAAGGGAAGCACCAGCAGGTGAGAAGCCAGAGCCAGTGCGCACCCATCTCCGGAACATGATTATTGTGCCTGAGATGATTGGTAGCATTATTGGAGTGTACAATGGTAAGACCTTCAACCAGGTTGAAATCAAACCCGAGATGATTGGCCATTATCTCGCTGAGTTCTCTATTTCATACAAACCCGTCAAGCACGGTAGACCTGGTATTGGTGCTACTCACTCATCCAGGTTCATTCCCCTTAAGTGA 543 0.4843 MVSICSSPTRVKRICGGCNFCLLLLHLQADVEVDVAAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00065 180 FunFam 40S ribosomal protein S15 37 180 - -
Pumo4g00065 180 Pfam Ribosomal protein S19 78 163 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pumo4g00065 180 ProSitePatterns Ribosomal protein S19 signature. 133 157 IPR020934 GO:0003723
Pumo4g00065 180 PRINTS Ribosomal protein S19 family signature 145 160 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pumo4g00065 180 PRINTS Ribosomal protein S19 family signature 113 132 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pumo4g00065 180 PRINTS Ribosomal protein S19 family signature 133 145 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pumo4g00065 180 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 38 180 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pumo4g00065 180 Hamap 30S ribosomal protein S19 [rpsS]. 76 169 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pumo4g00065 180 Gene3D 30s Ribosomal Protein S19; Chain A 37 180 IPR023575 GO:0003735|GO:0005840|GO:0006412
Pumo4g00065 180 NCBIfam 30S ribosomal protein S19 47 180 IPR005713 GO:0003735|GO:0006412|GO:0015935
Pumo4g00065 180 SUPERFAMILY Ribosomal protein S19 83 164 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00065 Pumo-Chr4 1012650 1013913 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00065 29 180 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 88.816 9.08e-94 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00065 K02958 - gmx:100801408 291.197