Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00058 ATGGATTCTATCAGTGGGGGGAACACTCTCACCAACAACCCTAATCTTGCTTCCAAACAGCGTTTACGCTGGACGCATGAGCTACACGAACGCTTTGTTGATGCAGTGGCACAACTTGGTGGTCCAGATCGTGCTACTCCTAAAGGGGTCCTCAGAGTTATGGGTGTACAGGGCTTAACAATATACCATGTCAAAAGCCACTTACAGAAATATCGACTAGCAAAATACCTACCTGACTCCTCATCAGATGGGATAAAAGGCGACAAGAAAGAAACAGGGGATATGCTTTCCAATCTAGATGGTTCACCTGGGATGCAGATTACTGAAGCACTAAAGCTTCAAATGGAGGTGCAGAAGCGACTGCATGAGCAATTGGAGGTGCAGAGACAGCTACAATTGCGGATAGAAGCCCAGGGTAAATACTTGAAGAAGATCATTGAAGAGCAACAGCGACTCAGTGGGGTTCTTTCAGAAGCCCCTGACTCTGGGGTTGCAGCTCCAGTTCCAAAAGATATGTGCCAAGAACCTGATAATAAGACTGACCCAGCAACCCCTGCCCCAACCTCTGAGTGCCTTCTGGAAAAAGCTTCCAAAGAGCATGCCCCAGCTAAGAGTCTTTCAATCGATGAATCTTTTTCATCCCACCATGAACCATTGACACCAGATTCTTGTTGCCATGTGGGTTCCCCTACTGACAGCCCTAAAGGGGAGAGATCTAAAAAAAAGCAAAGGGTGGGCATGGAGGGAGCATATTCTGAGCCAGAAATGGTGCTTCCGCACCAGATACTTGAGTCAAGCATGTCATCATATCAGCAACCAAACGCAGTTTTCCTTGCCCAAGAGCAATTTTGTCCTTCGTTGGGTATGTCTGCAAGAAGTGATAAGACGTTGGAGCAGGATGGTAACAGTAGTCTATGA 918 0.4695 MDSISGGNTLTNNPNLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGIKGDKKETGDMLSNLDGSPGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLSEAPDSGVAAPVPKDMCQEPDNKTDPATPAPTSECLLEKASKEHAPAKSLSIDESFSSHHEPLTPDSCCHVGSPTDSPKGERSKKKQRVGMEGAYSEPEMVLPHQILESSMSSYQQPNAVFLAQEQFCPSLGMSARSDKTLEQDGNSSL 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00058 305 FunFam Myb family transcription factor 18 76 - -
Pumo4g00058 305 Pfam MYB-CC type transfactor, LHEQLE motif 105 151 IPR025756 -
Pumo4g00058 305 MobiDBLite consensus disorder prediction 155 253 - -
Pumo4g00058 305 SUPERFAMILY Homeodomain-like 18 73 IPR009057 -
Pumo4g00058 305 Pfam Myb-like DNA-binding domain 22 72 IPR001005 -
Pumo4g00058 305 Coils Coil 108 128 - -
Pumo4g00058 305 MobiDBLite consensus disorder prediction 233 248 - -
Pumo4g00058 305 MobiDBLite consensus disorder prediction 79 102 - -
Pumo4g00058 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 76 IPR017930 -
Pumo4g00058 305 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 18 303 IPR044848 GO:0003700
Pumo4g00058 305 Gene3D - 18 77 - -
Pumo4g00058 305 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 74 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00058 Pumo-Chr4 946117 948825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00058 54 296 G2-like Transcription Factor Family AT2G01060 64.490 1.13e-94 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo4g00058 Myb_DNA-binding 1.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00058 - - gmx:100786925 471.855