Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00050 ATGAGTGAAAGAGTATTAGTAGCTCTGCTGCTTGTTTTGAATTATTTGTTGGTTGCAGAAGGAGAAACAGCTGCTGAGGATTGTGAGTTCAAACTAAGCTTTAGTAAGTTCAAAACCAGAAGCACTGGACCTGCTTTGGTTGTTACCACCCTTTTGTCTCTCATGAATACCTGGGAGAACACCCCTCCTAATTGGGTGGGTTCGGATCCTTGTGATGATTGGGAAGGAATTAAGTGCAGGAATTCACGTGTTACATCAATAACATTAGCAAGCACTGGTTTGGCTGGTCAGCTTTCTGGCGATATTGGATCACTGTCTAAATTGGAGACATTGGATCTATCATTCAACAAGGACTTGATGGGACTGCTTCCACAATCCATTGGACAGTTGAAGAAGCTGTCAACCTTAATTCTTGTTGGTTGTAGCTTCAATGGTCCTATTCCAGACAGCATAGGAAATCTGCACGAGCTCCTCTTCTTATCTTTAAACTCCAATCGCTTTAATGGACAAATTCCGCATTCTATTGGTAATTTATCAAAGCTTCATTGGTTAGATTTAGCTGACAATCAACTTCAAGGGAGCATCCCGGTATCTAGTGGCAACATATCTGGTCTTGATAAGTTACACCAAGCCAAGCATTTTCATCTTGGGAAGAATAATCTCTCAGGCAGTATTCCTCCTCAACTTTTTAGCTGGAAAATGGCTCTGATTCATGTGCTTTTGGAAAGCAATCAACTCACTGGCAACATTCCACCTACGCTTGGACTAGTTCAGAGTCTGGAGGTGGTGCGCTTAGATAGTAATTCATTAAGTGGACATGTGCCTCCAAACATCAACAATCTTACGAACGTACTTGTCCACAATAAACTGTCAGGCTCCCTGCCAAACCTTACTGGATTGAATGCCCTCAGCTACCTGGACATGAGCAACAATAGTTTTAAACCATTGGATTTTCCAGTATGGTTTTCGACTCTCAAGTCCTTAACAACATTAAAGATGGAGAAAACACAACTCCAAGGACAGGTTCCTTCTTCTTTGTTTAGACTTGTCAATTTACAGACTGTGGTGCTAAAAGACAACAGAATAAATGGAACCTTGGATGTCGGCTCCTCCTACAGCAACCAGCTGCGACTTGTTGATTTGGAGACTAATTCAATTGAAAGCTTTGAGCAAAAAGATAAAGTTTCAAATGTCACGATAATACTTAGAGATAACCCAATTTGCCAGGAAATTGGTGAAGTAGGGAGCTACTGCTTCTCTTCTCAACCCAATGTCTCATATTCAACACCACCAAATAACTGTCAACCTGGTACCTGCAGTTCAGAACAGATTTCTAGTCCCAACTGTATATGCGCATATCCATATTCGGGAACCATAGCTTTCAGGTCACTTTCCTTCACGGATCTAGATAACAAAACTTACTACGTAATGCTTGAGGAGTGTCTTATGCAATCTTTCAAGTCTTATTTTCTACCTGTGGATTCGGTTCGGTTGAGCCATCCAAGTATAGATTCAGATCAATATCTCAATTTGAGCTTACAAGTCTTCCCATCAGGACAAGATCATTTCAATCGAACAGGGGCTTTTAGCATTGGTTTTCTGCTAAGCAGCCAGTCTTTTAATTCTCCTGAAGGTTTTGGACCATCTTTTTTCTCCGTAGATAAATATGAACACTTTGGAAACTCGGAAGGATTGACTGAATCGAGTAAATCTTCAAACATTGGAATCATAATTGGGGCAGCAGTTGGTGGTTCGGTCTTGCTAGTGTTATTACTCCTAGCTTGTCTTTATGCTTTCTGCCAAAAGAAAAGGGCCGAAAAAGTGATTGGACAAAGCAATCCTTTTAGAGGCTGGGATACAGATGAGAGCAACAGTGAGATCCCTCAGTTGAAAGAATCAAGGATGTTTTCTTTTGAAGAGCTTAAAAAATACACCAAAAATTTTTCTCAAGTCAATGATATTGGATCTGGGGGTTTTGGGAAGGTTTATAAGGGAATCCTTCCCAATGGGCAAATGATAGCAATAAAACGAGCTCAAAAAGAATCTATGCAGGGAAAGCTTGAGTTTAAAGCGGAGATTGAGCTCCTATCAAGGGTCCACCATAAGAATCTTGTCAGTCTTTTGGGATTCTGCTTTGAGCAAGGAGAACAAATGCTGGTTTATGAGTATGTTCTAAATGGAAGTTTAAAAGATGCCCTCTTAGGGAAGTCAGGAATTAGATTAGATTGGATTAGAAGGCTAAACGTTGCGCTTGGTACTTCCCGGGGTTTGGCTTATCTTCACGAACTTGCTAATCCTCCCATCATACATAGCGACATCAAATCAAACAACATTTTGCTCGATGACCACCTAGATGCCAAAGTTGCTGATTTTGGTCTCTCCAAGTCTATAGTTGATAATGGAAAACATCATGGTTACTTGGATCCAGAGTACTATATGTCTCAACAGTTGACTGAGAAGAGTGATGTTTATAGCTTTGGAGTGCTAATGTTGGAGCTGATATCTGCAAGAAGGCCATTGGAACGAGGGAAGTATATTGTGAAAGAGGTTAGGAATGCACTTGATTAA 2568 0.4065 MSERVLVALLLVLNYLLVAEGETAAEDCEFKLSFSKFKTRSTGPALVVTTLLSLMNTWENTPPNWVGSDPCDDWEGIKCRNSRVTSITLASTGLAGQLSGDIGSLSKLETLDLSFNKDLMGLLPQSIGQLKKLSTLILVGCSFNGPIPDSIGNLHELLFLSLNSNRFNGQIPHSIGNLSKLHWLDLADNQLQGSIPVSSGNISGLDKLHQAKHFHLGKNNLSGSIPPQLFSWKMALIHVLLESNQLTGNIPPTLGLVQSLEVVRLDSNSLSGHVPPNINNLTNVLVHNKLSGSLPNLTGLNALSYLDMSNNSFKPLDFPVWFSTLKSLTTLKMEKTQLQGQVPSSLFRLVNLQTVVLKDNRINGTLDVGSSYSNQLRLVDLETNSIESFEQKDKVSNVTIILRDNPICQEIGEVGSYCFSSQPNVSYSTPPNNCQPGTCSSEQISSPNCICAYPYSGTIAFRSLSFTDLDNKTYYVMLEECLMQSFKSYFLPVDSVRLSHPSIDSDQYLNLSLQVFPSGQDHFNRTGAFSIGFLLSSQSFNSPEGFGPSFFSVDKYEHFGNSEGLTESSKSSNIGIIIGAAVGGSVLLVLLLLACLYAFCQKKRAEKVIGQSNPFRGWDTDESNSEIPQLKESRMFSFEELKKYTKNFSQVNDIGSGGFGKVYKGILPNGQMIAIKRAQKESMQGKLEFKAEIELLSRVHHKNLVSLLGFCFEQGEQMLVYEYVLNGSLKDALLGKSGIRLDWIRRLNVALGTSRGLAYLHELANPPIIHSDIKSNNILLDDHLDAKVADFGLSKSIVDNGKHHGYLDPEYYMSQQLTEKSDVYSFGVLMLELISARRPLERGKYIVKEVRNALD 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00050 855 ProSitePatterns Serine/Threonine protein kinases active-site signature. 768 780 IPR008271 GO:0004672|GO:0006468
Pumo4g00050 855 Gene3D Ribonuclease Inhibitor 209 284 IPR032675 -
Pumo4g00050 855 FunFam Leucine-rich repeat protein kinase family protein 201 296 - -
Pumo4g00050 855 SMART serkin_6 648 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00050 855 FunFam Leucine-rich repeat family protein 47 200 - -
Pumo4g00050 855 Gene3D Ribonuclease Inhibitor 47 204 IPR032675 -
Pumo4g00050 855 FunFam Leucine-rich repeat protein kinase family protein 616 723 - -
Pumo4g00050 855 Pfam Protein tyrosine and serine/threonine kinase 651 840 IPR001245 GO:0004672|GO:0006468
Pumo4g00050 855 ProSitePatterns Protein kinases ATP-binding region signature. 654 676 IPR017441 GO:0005524
Pumo4g00050 855 PANTHER RECEPTOR-LIKE PROTEIN 55 56 849 - -
Pumo4g00050 855 Gene3D Ribonuclease Inhibitor 286 426 IPR032675 -
Pumo4g00050 855 SUPERFAMILY L domain-like 78 425 - -
Pumo4g00050 855 Gene3D Transferase(Phosphotransferase) domain 1 725 855 - -
Pumo4g00050 855 ProSiteProfiles Protein kinase domain profile. 648 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00050 855 SUPERFAMILY Protein kinase-like (PK-like) 622 841 IPR011009 -
Pumo4g00050 855 Gene3D Phosphorylase Kinase; domain 1 618 723 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00050 Pumo-Chr4 837168 848820 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00050 30 851 Receptor kinase-like Gene Family AT1G79620 52.074 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Pumo4g00050 PK_Tyr_Ser-Thr 5.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00050 - - gmx:100811702 1341.25