LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo4g00047	ATGATAATGGGTGAAAAAACAATGCTACCTCTGGTGCTTGTTCTCTATTATTTGTTGCTTGCGGTAGCAGCACAAACAAATAATGAGGATTTCACAGCTCTGGTGTCTCTTACAAGTACCTGGCAGAATAAACCTCTCAATTGGAAGGGATCAACAGATCCTTGTAATGATTGTTGGGATGGAATCAAGTGCATCAAGTCACGTGTTACTTCCATAAGATTAGCGGGCTTGGATATAAAAGGCGAGCTTTCAGAAGATATTGGGTTGCTGTCTGAATTGGAGACACTAGACCTCTCACACAATAAGGGGTTAACTGGTTCACTTCCACGTTCAATTGGAAATTTGACCAAGCTGTCAAACTTATTTCTTGTTGGTTGTGGTTTCACTGGTCCTATTCCAGATGAAATAGGATCCCTTAAGGAGCTGGTCTTCTTATCTTTAAATTCTAACAGCTTCAGTGGACGAATTCCGGCTTCTATTGGTAATCTATCAAAACTTAATTGGTTAGATATAGGTGACAATCAGCTCGAAGGACCCATTCCCATATCAAGTGGCAGTACACCTGGTCTTGATATGCTTCTCAGTACCAAACACTTTCATTTTGGGAAGAATAAGCTTTCAGGCATTATTCCTGCACAACTTTTTAGCTCGGAAATGACTCTTATACATTTGCTTTTTGAAAACAATGAATTTGAGGGCAACATTCCTTCTACTCTTGGAATTGTTCAGAGTCTAGAGGTGGTGCGCCTTGATGGCAACTTGTTAAGTGGACATGTGCCTCTCAACATCAACAATCTTACTCACGTCAATGAGCTGTACTTGCTCAACAATAAGCTGTCCGGCCCCCAGCCAAACCTTGAGGGAATGAACCAACTCAGCTACTTGGATATGAGCAACAATAGTTTTGATGAATCGGATTTTCCAGCATGGATTTCGACTCTTAAATCTTTGTCAACACTAAAGATGGAAAACACAGGACTTCAAGGGCAGATTCCTGATTCTTTGTTTAGCCTTTCCAAGTTAAAGAACGTGATACTAAAAGACAATAGAATCAGTGGAAGCCTGGACATTGGCAACACATACAGCAAGCAACTCCAACTCATTGATCTGCAGAACAATAGAATTGAAGACATCAAGCAAGAAGACATGGTACCCTCCAGTGTCAAGATAATACTTGTCCATAATCCAGTTTGCGAGGAATCAGGAGTGACAAAGAGTTACTGCTCCAACCCCAACCCAGAGGTGAGTGTACCATCGACAACAACAAAGAATTGTGAGCCTGCTACCTGCAGTTCAGGTCAGGTTTTCAGCGCCCACTGCAAATGCTCATATCCATACACAGGAATTTTAAGGTTCAGAACACCTTCTTTCTGGGACTGGTGGAATGAAACCTCCCTCCAGGAACATCTGATGCATACTTTTCAGTTTTGTAATCTACCTGTGGATTCAGTTTCCTTGAGCACTCGTGATAACTCTCAGTATCTTGAATTCACCTTACAAATCTTCCCATCAAACCGTGATTATTTCAACCAAGCAGATATTCTGAGCATTTGTTCTGCACTAAGCAACTTGACTATGGATGCATTTTATTTTTATCCTGATGAATATGAACACTATGAAGAACTTGCTGAGTCAAGTAAGTCATCAAATTCAGACTTCATAATTAGAGCAGCAATTGGTGGTGGTTCAGCCCTGCTTGTGTTAATACTCCTCGCAGGTGCTTATGCTTTATGGCTAAAGAAAAAGGCAGAAAAAGCAATCCAACAAAATTATCCTTTTGGAAGTGGGGACCCGAGTGACAGCAATAGTAGCATCCCTCAGTTAAAAGGGGCAAGGAGATTCTCTTTTGAAGAGCTTCAGAAATACACCAACAAATTTTCGCAAGATAATGATATTGGATCCGGGGGCTATGGAAAGGTTTATCGGGGAATTCTACCCAATGGGCAACTCATAGCCATAAAACGAGCTCAAAAAGAATCTATGCAGGGAGGGCTCCAGTTTAAAGCTGAGGTTGAGCTTCTATCAAGGGTCCACCATAAGAATCTTGTTAGCCTTGTGGGTTTCTGTTTTGAGCGAGGAGAGCAAATTCTGGTGTATGAGTATGTTTCAAATGGAAGTTTAAAGGATGCTATCTTAGGGAAATCAGTAATTAGGTTGGACTGGATTAGACGACTAAAAATAGCACTTGATATTGCAAGGGGCTTGGATTATCTTCATCAACATGCCAATCCTCCTATCATCCACAGGGACATCAAATCAGGCAACATTTTGCTGGACGAGCGTTTGAATGCTAAAGTTGCTGATTTTGGTCTTTCCAAGATGGTTGATTTTGGAAAGGATCATGTTACCACTCAAGTAAAAGGGACGATGGGATACTTGGATCCAGAGTATTACACAAGTCAACAATTGACAGAGAAGAGTGATGTTTATAGCTATGGAGTGCTAACGTTGGAGTTGATAACTGCAAAAAGACCAATAGAACGAGGGAAGTATATTGTGAAGGTGGTTAGGAAAGAAATTGATAAGACGAAAGATTTATATGGTCTTGAGAAAATTCTGGACCCAACCATTGGTCTAGGGTCAACATTGAAGGGTTTTGAGATGCTTGTGGATCTTGCAATGAAGTGTGTTGAAGATTCACGTGCTGACAGGCCTACAATGAATGATGTGGTGAAAGAAATTGAAAACGTGTTGGTGTCATCTGGTTTGAACTGCTCAGCTGAATCAACTTCATCTAGCTATGACGAGGTAAGTGTGCAATTCTCACCATCCCTACACCAATGA	2784	0.4106	MIMGEKTMLPLVLVLYYLLLAVAAQTNNEDFTALVSLTSTWQNKPLNWKGSTDPCNDCWDGIKCIKSRVTSIRLAGLDIKGELSEDIGLLSELETLDLSHNKGLTGSLPRSIGNLTKLSNLFLVGCGFTGPIPDEIGSLKELVFLSLNSNSFSGRIPASIGNLSKLNWLDIGDNQLEGPIPISSGSTPGLDMLLSTKHFHFGKNKLSGIIPAQLFSSEMTLIHLLFENNEFEGNIPSTLGIVQSLEVVRLDGNLLSGHVPLNINNLTHVNELYLLNNKLSGPQPNLEGMNQLSYLDMSNNSFDESDFPAWISTLKSLSTLKMENTGLQGQIPDSLFSLSKLKNVILKDNRISGSLDIGNTYSKQLQLIDLQNNRIEDIKQEDMVPSSVKIILVHNPVCEESGVTKSYCSNPNPEVSVPSTTTKNCEPATCSSGQVFSAHCKCSYPYTGILRFRTPSFWDWWNETSLQEHLMHTFQFCNLPVDSVSLSTRDNSQYLEFTLQIFPSNRDYFNQADILSICSALSNLTMDAFYFYPDEYEHYEELAESSKSSNSDFIIRAAIGGGSALLVLILLAGAYALWLKKKAEKAIQQNYPFGSGDPSDSNSSIPQLKGARRFSFEELQKYTNKFSQDNDIGSGGYGKVYRGILPNGQLIAIKRAQKESMQGGLQFKAEVELLSRVHHKNLVSLVGFCFERGEQILVYEYVSNGSLKDAILGKSVIRLDWIRRLKIALDIARGLDYLHQHANPPIIHRDIKSGNILLDERLNAKVADFGLSKMVDFGKDHVTTQVKGTMGYLDPEYYTSQQLTEKSDVYSYGVLTLELITAKRPIERGKYIVKVVRKEIDKTKDLYGLEKILDPTIGLGSTLKGFEMLVDLAMKCVEDSRADRPTMNDVVKEIENVLVSSGLNCSAESTSSSYDEVSVQFSPSLHQ	927

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo4g00047	927	SUPERFAMILY	L domain-like	63	404	-	-
	Pumo4g00047	927	CDD	STKc_IRAK	632	896	-	-
	Pumo4g00047	927	Gene3D	Ribonuclease Inhibitor	285	432	IPR032675	-
	Pumo4g00047	927	FunFam	Leucine-rich repeat family protein	29	185	-	-
	Pumo4g00047	927	Gene3D	Ribonuclease Inhibitor	187	284	IPR032675	-
	Pumo4g00047	927	ProSitePatterns	Protein kinases ATP-binding region signature.	632	654	IPR017441	GO:0005524
	Pumo4g00047	927	SMART	serkin_6	626	899	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo4g00047	927	FunFam	Leucine-rich repeat protein kinase family protein	595	701	-	-
	Pumo4g00047	927	SUPERFAMILY	Protein kinase-like (PK-like)	600	897	IPR011009	-
	Pumo4g00047	927	FunFam	Leucine-rich repeat protein kinase family protein	186	285	-	-
	Pumo4g00047	927	ProSiteProfiles	Leucine-rich repeat profile.	364	385	IPR001611	GO:0005515
	Pumo4g00047	927	Gene3D	Phosphorylase Kinase; domain 1	597	701	-	-
	Pumo4g00047	927	Pfam	Protein kinase domain	627	892	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo4g00047	927	Gene3D	Transferase(Phosphotransferase) domain 1	702	915	-	-
	Pumo4g00047	927	Gene3D	Ribonuclease Inhibitor	26	186	IPR032675	-
	Pumo4g00047	927	PANTHER	RECEPTOR-LIKE PROTEIN 55	37	896	-	-
	Pumo4g00047	927	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	746	758	IPR008271	GO:0004672\|GO:0006468
	Pumo4g00047	927	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	702	911	-	-
	Pumo4g00047	927	ProSiteProfiles	Protein kinase domain profile.	626	898	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo4g00047	Pumo-Chr4	792073	799872	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo4g00047	3	913	Receptor kinase-like Gene Family	AT5G49760	55.161	0.0	898

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Pumo4g00047		Pkinase	8.5e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo4g00047	-		-	gmx:100811702	1117.83