Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00045 ATGGAAAACCCCGACCTGGCTAGACGATGCTTGAAGCGTAAGGTCGAACTAGAAGATGACCAAACAGATCCCAATGTTGAACAACCTTGCGCAAATTTTTCTACCGAGATTCTCCAACAAGTTTCTCTCCTCAATTCCGCTCTTTCACCCTCCGCCTCGGATCGTGCCGCTGTGAAGAGCGCCGTCCTCGCCATCGTTAAACTCATTAAAAAAGTGAGGCATCTTCAGGCTGTAAAAGATGACGGTGACGGCGTTACCCAACCTTTCCAGCATGAAGTGGAGAAAGGATGTGCTTTTATCCTCATGTTTCTTGCCATTAAACCAGAGCATCAGCAACTCATTATAGATGCTGGAGCCTTGCCCTGTCTTATAGATTTGTTAAGGAGGCAAAAGATCAGTACCATTTCTCGGCCACTTATTGGTCTTCTAAGGAGAGCAGCTGATGCAATATTCAATCTTGCCCGCAAAAATACCATCATTAAGACCCTTGTCAGGATGGAAGGCGGTATCCCTCCTCTTGTTGAATTGCTTGAATTCAATGTCACAAAGGTACAAAGAGCTGCTGTAGTCGCCTTGCGAACTGTTGCATTCACAAATGATGACAATAAAAAGCAGATTGTTGAATGCAATGCATTACCCACTCTTGTACTAATGCTTCGATCAGAGGATCCTACAATTCGTTATGCAGCAGTTTCTGTGATTGAAATTCTGGTCCACTCTTTACCAAATATTCAGAAAGACGTTCTTCAAGCTGGGGCTTTACAACCTGTCATTTGTTTACTTAGTGATAGTTCCTGTGATGGGAAGAGCCAAAGAGCAGCAGCCCTTTTACTTGGTCTATTTGCTGCACCAGATTCAGATTGCAAGGTTCATATTTCTCAAAGAGGGGCTATTCCACCATTGGTTGACATGCTTAAGTCTCCAGATGCACAACTTCAGGAAATGTCAGCTTTTGCACTTACGAGGTTGGCACAGGACTCACATAATCAAGCTAGTATTACTCATAATGGAGGTATAGAGCCTCTTCTCAATCTTCTTGACTCGGACAATGCACGCATCCAATGTCATGCTGCTTATGCTCTCTATCGTCTTGCTGATAATGAGGACATTGTTGCAGATATTATTAAGGCTGGTGGTTTTCAAAAACTGAAGGATGGACATTTCAGAGGTCACGTATGTTCATTTATTCTTCTTTGTAATTAA 1203 0.4306 MENPDLARRCLKRKVELEDDQTDPNVEQPCANFSTEILQQVSLLNSALSPSASDRAAVKSAVLAIVKLIKKVRHLQAVKDDGDGVTQPFQHEVEKGCAFILMFLAIKPEHQQLIIDAGALPCLIDLLRRQKISTISRPLIGLLRRAADAIFNLARKNTIIKTLVRMEGGIPPLVELLEFNVTKVQRAAVVALRTVAFTNDDNKKQIVECNALPTLVLMLRSEDPTIRYAAVSVIEILVHSLPNIQKDVLQAGALQPVICLLSDSSCDGKSQRAAALLLGLFAAPDSDCKVHISQRGAIPPLVDMLKSPDAQLQEMSAFALTRLAQDSHNQASITHNGGIEPLLNLLDSDNARIQCHAAYALYRLADNEDIVADIIKAGGFQKLKDGHFRGHVCSFILLCN 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00045 400 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 296 338 IPR000225 GO:0005515
Pumo4g00045 400 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 168 203 IPR000225 GO:0005515
Pumo4g00045 400 SUPERFAMILY ARM repeat 91 383 IPR016024 -
Pumo4g00045 400 Pfam Armadillo/beta-catenin-like repeat 285 324 IPR000225 GO:0005515
Pumo4g00045 400 Pfam Armadillo/beta-catenin-like repeat 199 234 IPR000225 GO:0005515
Pumo4g00045 400 Pfam Armadillo/beta-catenin-like repeat 326 365 IPR000225 GO:0005515
Pumo4g00045 400 Pfam Armadillo/beta-catenin-like repeat 163 193 IPR000225 GO:0005515
Pumo4g00045 400 Gene3D - 266 386 IPR011989 -
Pumo4g00045 400 Gene3D - 34 265 IPR011989 -
Pumo4g00045 400 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 337 379 IPR000225 GO:0005515
Pumo4g00045 400 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 118 168 IPR000225 GO:0005515
Pumo4g00045 400 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 7 389 IPR044282 -
Pumo4g00045 400 SMART arm_5 107 155 IPR000225 GO:0005515
Pumo4g00045 400 SMART arm_5 241 283 IPR000225 GO:0005515
Pumo4g00045 400 SMART arm_5 157 197 IPR000225 GO:0005515
Pumo4g00045 400 SMART arm_5 326 366 IPR000225 GO:0005515
Pumo4g00045 400 SMART arm_5 285 325 IPR000225 GO:0005515
Pumo4g00045 400 SMART arm_5 199 239 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00045 Pumo-Chr4 741241 748406 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00045 261 400 U-box Gene Family AT2G23140 31.944 6.80e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00045 - - ccaj:109817836 452.21