Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00040 ATGGCAATTGCAGCAGCAAACTCATCACCCACCATGAGCCTCAGCCAGAGCCAGAGCCAAGAGGACGCCACCACCGCCTCCACCACCAACGACAACAACAACAATAACAAGCCTGATGATCACGAGCATGACATGGTCATGCCCGGCTTTCGCTTCCACCCAACAGAAGAAGAGCTCGTGGAATTCTACCTTCGCCGTAAGGTGGAGGGAAAGCGTTTCAACGTTGAGCTCATTACTTTCCTCGATCTTTATCGCTATGACCCTTGGGAGCTTCCCGCCTTGGCAGCTATTGGTGAGAAGGAGTGGTACTTCTATGTGCCGAGAGATAGAAAGTATCGCAACGGTGATCGTCCCAATCGTGTTACTACTTCTGGGTATTGGAAGGCAACAGGAGCTGATAGGATGATCCGAACCGAGAATTTTCGCTCTATCGGCCTCAAGAAAACCCTAGTTTTCTATTCAGGGAAAGCTCCTAAAGGCATCCGAACTAGTTGGATTATGAACGAGTATCGCTTGCCCCATCATGAAACTGAACGATATCAAAAGGCAGAGATATCGCTTTGCCGTGTGTACAAGAGAGCTGGAGTAGAGGACCATCCCTCCCTCCCTCGCTGTCTCCCAACAAGGCCATCTTCATCAAGAGCTTCTTCACATTCTGACAGTAAGAAGCACAATGAAATGGTTCACCACAACATCAACATGGGATTTGTGGGACAATCAAAGCCAACTGAACACGTAGTTGACAAAATGAATGAAACGGAAGCAAGCAGTGATGTTCAACACAGCTCTCGGACTTTCCAAATACAATGCTTACCGTGCTGCAATGGGTGCACTCAGCACCACAATGGCACTTCCAGTTGTTCCAATGGACGATGA 876 0.4863 MAIAAANSSPTMSLSQSQSQEDATTASTTNDNNNNNKPDDHEHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPHHETERYQKAEISLCRVYKRAGVEDHPSLPRCLPTRPSSSRASSHSDSKKHNEMVHHNINMGFVGQSKPTEHVVDKMNETEASSDVQHSSRTFQIQCLPCCNGCTQHHNGTSSCSNGR 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00040 291 ProSiteProfiles NAC domain profile. 46 193 IPR003441 GO:0003677|GO:0006355
Pumo4g00040 291 MobiDBLite consensus disorder prediction 1 47 - -
Pumo4g00040 291 Pfam No apical meristem (NAM) protein 48 172 IPR003441 GO:0003677|GO:0006355
Pumo4g00040 291 Gene3D NAC domain 55 196 IPR036093 GO:0003677|GO:0006355
Pumo4g00040 291 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 43 250 - -
Pumo4g00040 291 SUPERFAMILY NAC domain 46 192 IPR036093 GO:0003677|GO:0006355
Pumo4g00040 291 MobiDBLite consensus disorder prediction 199 224 - -
Pumo4g00040 291 MobiDBLite consensus disorder prediction 1 34 - -
Pumo4g00040 291 FunFam NAC domain-containing protein 35 55 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00040 Pumo-Chr4 649574 651324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00040 45 219 NAC Transcription Factor Family AT2G02450 88.571 1.65e-116 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo4g00040 NAM 2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00040 - - gmx:100792622 463.766