Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00034 ATGTCAGAAATGCGGGTATCTGAGCTTCACTTGAAGAAGGAGCTCACCCAAATCCGGAAGGCTGCTCGAGTACTCAGAGATCCTGGCACCACTTCTTCTTGGAAGTCTCCACTCAGTTCATCAAGATCTGTGGCTGCATGGAACAAAGACACTGGGACTGGGAGTACAAGGTTCACTACTAATTCTCAACTTCCCAACAACAACAATGACAAGGACAAAAGGGTCTTCTTGTACAATTGGAAGAACTACAAATCTTCCAGTGAGAAATACAACGAGGAAGAAGAAGAAGAAGAAGAAGAAGATGATGGTGGTGGATCTTCCTCGCTTCTTGGGGACAGAGACAGTTTGAGTGATGCTCGCAATGGTTGTGACTCAAAGAGTGATACTTACTTGGCTGCTGCTGGTGGCGGCACTCGTTCTTCTTCTATTTTCCGATGTGGGGATGCGAACCTTGTTTCCAGAAGAACGGTTCCCGTTAAGAAAAAGAGTAAGAAAAATAACCCCCATTTTGATTTTTTAGCAAAGTATCAACACCATAGACAAGGAAGAAATTTTGTGAGTTCTTCCAAGGCATTGCTAGAGGGGCATCCTTTACCTTTTTTTAGCAGGGATGACTCGGTTGAACACTCTGATGATACCGAGGATTACACTAATTCTGAGGGTGTCAGACCAATTTCGGGGACTTCCCCTTTGCTCCTCAAACTCAGGCAAAAGAATTGGTCTCGCTCTTCCTCTAAGTTTTTGAGAAGAAGCCGGAAAGAGGACTCTTCTTATTCTTATAGCACCCCTGCGTTGTCAACTAGTTCTTACAATAGGTACGGTCACCGTTATCCCAGCACTCTTGGATCCTGGGATGGAACCACCACCTCCGTGAATGATGGCGATGGCGACGATGAGATTGATGATCATTTGGGTTTGCCCGGCCGTCAAGGATGTGGAATTCCTTGCTACTGGTCCAAGAGGACTCCTAAACATAGAGGGATGTGTGGGAGTTGTTATTCTCCCTCACTGTCGGATACTTTGAGGAGGAAAGGGAGTAGCATGCTCTGTGGAAGTCAAACTATTTATCCAAGACACCGGAGATCGGCTTCGGCTTCTCACAAGCGGAGACTCTCTTTGAGGAGTGCTCGAGGTGTTATTCCATTGCTCACTAACAGTGGTGATGTTAGAGAAGGGTCGTCTGTGGGAACCGGTAGGAGTGATGACGAGCTTTCCACAAACTTTGGGGAGCTTGATCTTGAGGGATTGAGCCGGTTGGATGGAAGAAGGTGGTCATCGAGTTGTAGGAGTCAAGAGGGATTGGAGATTGTAGCTCTCAATGGGGAAGGGGAAGATGAGGGCACGCCAGAAAATAATCGGAGTTTCAGCCAGAAGTATAGGCCCATGTTCTTTGGTGAACTGATCGGGCAGAATATTGTGGTTCAGTCACTTATCAATGCTGTTTCAAGGGGACGGATTGCTCCCGTCTATCTGTTTCAAGGTCCCCGTGGGACTGGCAAAACATCAACCGCTAGGATATTTGCTGCTGCCTTGAATTGTGCGAGTCCTGATGAGGGTAAACCTTGTGGCTACTGCAGGGAATGTGTTGATTTCATTTCTGGTAAGAGCAGTGATCTACTGGAAGTTGATGGAACCAATAAGAGAGGAATTGATAAGGCTAGATATCTACTAAAACGATTGTCAACTGGGTCATCATCAGCCTCCCCACAATATACAATTTTTGTTATTGACGAGTGTCACCTGTTGCCCTCCAAGACATGGCTGGGATTTCTTAAGTTTCTGGAAGAACCACCCCAGCGAGTTGTATTCATATTTATAACATCTGATCTTGACAATGTGCCACGAACAATACAATCTCGATGCCAGAAGTACCTTTTTAATAAAATTAAAGATGGGGATATTGTGACCAGGTTGAGGAAAATATCTACTCAAGAGAACCTTGATGTTGAAGCAGATGCACTGGACCTCATTGCTATGAATGCAGATGGTTCACTTCGAGATGCAGAAACAATGTTAGAACAACTCAGTTTGCTGGGGAAGAGAATTACTACTTGTCTTGTCAATGAACTTGTGGGAGTTGTTTCAGATGAAAAATTATTGGAACTTTTGGAGTTAGCAATGTCATCAGATACTGTAGAGACAGTGAAAAGAGCCAGAGAATTGATGGACTCTGGAGTTGATCCAATGGTTTTGATGTCTCAACTAGCGGGTCTTATCATGGACATCATTGCTGGATCATATGCAGTCATTGACACCAAACCTGATGATTCATTCTTTGGTGGACGCAGTTTGAATGAATCAGAGTTGGAGAGGTTAAAGAATGCTTTGAAGCTTCTCTCAGAGGCTGAGAAACAGTTAAGGACATCCAGTGAACGCTCTACATGGTTCACAGCGACTCTATTGCAGCTTGGTTCTACACCTTCTCCTGATCTTACTCATTCAAGCAGCAGTAGGAGACAGAGCTGCAAGACAACTGAAGATGATCCGTCAAGTGTTTCAAGAGACGTTACCTCTGGCACGCACAAGTCAGACCCTCAATATGTGCCTCGAAAGTTAACATACACTGCATCCCAGCAAAAAGCAGTAAATGATAATTCCCACCATCAAAAGGATATATCCTCAAAGATTGAAGGTTTCAGCTTGAAATCAAAGCCTTCAAATGGCCCGGTCATAGATGATGGCTCCACAGTGGTCTCATCTGATGATCTTATGGTTGGGAATACAATGTTTAGGTGCATAGATTCAGGGAAGTTATCTGACATCTGGGTGCATTGTATCGAGAGGTGTCACTCTAAGACATTGAGGCAGCTGCTACACAATCATGGAAAGCTTGTGTCTGTATGTGAAGTAGAAGGTGTTTTGGTAGCATATGTTGCTTTTGGAGATGCAGATATTAAAGTTAGGGTTGAGAGGTTTTTAAGAAGCATTACAAACTCCATGGAAATGGTTCTTAGGCGCAATGTGGAGGTCAGAATAATCCACTTGCCAGATGGTGAAGGTGAAAATCAAGTTAATCTACTGGGTCTTAAGCAGGCAGAGTCAACAGTGGCTGGTGAGAAGGAACAAAGAAAGGGTCATATGAACGGAACAGAGTCTTATTCTAGTTTGCCTCCTTTACTGGATGGAAACCTTCAATCTACCACTGCTTCATCAGATATTTTGGCCGAAGGAAATGGTGTGAGGGAGAGGAGACAGAATAATCCAATGCAAAGAATTGAATCCATCATTCGTGAACAGAGGCTGGAAACTGCCTGGTTACAGACTGTAGAAAAGGGTTCCCCTGGATCATTGAGTCGTTTGAGACCTGAGAAGAATCAAGTACTGCCACAGAATGGTGTAGACCCAATGGAGTCCATGGATTCAACAAGATTTTCCTCTCACCAGCATTGGGAAGATGACACAAATAATGAAGTCAAAGTTTTAAGCCTTAAAAATGGAAGGGTCCCACAGAAGGATCAGATTGCTAGAAAGGCAGATCGTTATCCCATGTCCCCAAGTTTATTGCATGACAACAGTTTAGCAACAATTTCTGGAAAAGACAATCTGGGATATGAATCAGGGACGGGAGGTGGTGGTTGTGGATTTTTATGTTGGAATAAGTCCAAGCCTAGAAGGGTAATAAAGGTAAAAGGTGGCACCCCAGTTAGAGCCCGGAGAGCTGCAACTTTTACATTGTTTGGTGACTGTGCTAAGCCAAAGAAAAGGGAGCGGAGAAGATAA 3720 0.4422 MSEMRVSELHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAWNKDTGTGSTRFTTNSQLPNNNNDKDKRVFLYNWKNYKSSSEKYNEEEEEEEEEDDGGGSSSLLGDRDSLSDARNGCDSKSDTYLAAAGGGTRSSSIFRCGDANLVSRRTVPVKKKSKKNNPHFDFLAKYQHHRQGRNFVSSSKALLEGHPLPFFSRDDSVEHSDDTEDYTNSEGVRPISGTSPLLLKLRQKNWSRSSSKFLRRSRKEDSSYSYSTPALSTSSYNRYGHRYPSTLGSWDGTTTSVNDGDGDDEIDDHLGLPGRQGCGIPCYWSKRTPKHRGMCGSCYSPSLSDTLRRKGSSMLCGSQTIYPRHRRSASASHKRRLSLRSARGVIPLLTNSGDVREGSSVGTGRSDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVALNGEGEDEGTPENNRSFSQKYRPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCASPDEGKPCGYCRECVDFISGKSSDLLEVDGTNKRGIDKARYLLKRLSTGSSSASPQYTIFVIDECHLLPSKTWLGFLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKISTQENLDVEADALDLIAMNADGSLRDAETMLEQLSLLGKRITTCLVNELVGVVSDEKLLELLELAMSSDTVETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYAVIDTKPDDSFFGGRSLNESELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSTPSPDLTHSSSSRRQSCKTTEDDPSSVSRDVTSGTHKSDPQYVPRKLTYTASQQKAVNDNSHHQKDISSKIEGFSLKSKPSNGPVIDDGSTVVSSDDLMVGNTMFRCIDSGKLSDIWVHCIERCHSKTLRQLLHNHGKLVSVCEVEGVLVAYVAFGDADIKVRVERFLRSITNSMEMVLRRNVEVRIIHLPDGEGENQVNLLGLKQAESTVAGEKEQRKGHMNGTESYSSLPPLLDGNLQSTTASSDILAEGNGVRERRQNNPMQRIESIIREQRLETAWLQTVEKGSPGSLSRLRPEKNQVLPQNGVDPMESMDSTRFSSHQHWEDDTNNEVKVLSLKNGRVPQKDQIARKADRYPMSPSLLHDNSLATISGKDNLGYESGTGGGGCGFLCWNKSKPRRVIKVKGGTPVRARRAATFTLFGDCAKPKKRERRR 1239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00034 1239 SUPERFAMILY post-AAA+ oligomerization domain-like 700 801 IPR008921 GO:0003677|GO:0006260
Pumo4g00034 1239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 676 IPR027417 -
Pumo4g00034 1239 MobiDBLite consensus disorder prediction 1020 1045 - -
Pumo4g00034 1239 Pfam DNA polymerase III subunits gamma and tau domain III 686 802 IPR022754 GO:0003887
Pumo4g00034 1239 FunFam DNA polymerase III subunit gamma/tau 630 692 - -
Pumo4g00034 1239 Pfam DNA polymerase III, delta subunit 469 629 - -
Pumo4g00034 1239 MobiDBLite consensus disorder prediction 806 847 - -
Pumo4g00034 1239 CDD HLD_clamp_pol_III_gamma_tau 629 692 IPR045085 -
Pumo4g00034 1239 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 457 872 - -
Pumo4g00034 1239 MobiDBLite consensus disorder prediction 201 218 - -
Pumo4g00034 1239 MobiDBLite consensus disorder prediction 201 228 - -
Pumo4g00034 1239 MobiDBLite consensus disorder prediction 91 105 - -
Pumo4g00034 1239 FunFam DNA polymerase III subunit gamma/tau 450 628 - -
Pumo4g00034 1239 Gene3D - 445 627 IPR027417 -
Pumo4g00034 1239 CDD AAA 468 626 - -
Pumo4g00034 1239 MobiDBLite consensus disorder prediction 24 71 - -
Pumo4g00034 1239 MobiDBLite consensus disorder prediction 87 126 - -
Pumo4g00034 1239 SMART AAA_5 486 636 IPR003593 GO:0016887
Pumo4g00034 1239 MobiDBLite consensus disorder prediction 831 847 - -
Pumo4g00034 1239 MobiDBLite consensus disorder prediction 29 71 - -
Pumo4g00034 1239 MobiDBLite consensus disorder prediction 385 406 - -
Pumo4g00034 1239 Coils Coil 762 792 - -
Pumo4g00034 1239 Gene3D - 631 692 - -
Pumo4g00034 1239 MobiDBLite consensus disorder prediction 387 404 - -
Pumo4g00034 1239 MobiDBLite consensus disorder prediction 1028 1045 - -
Pumo4g00034 1239 NCBIfam DNA polymerase III subunit gamma/tau 454 803 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00034 Pumo-Chr4 603693 610820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00034 450 744 Core DNA Replication Machinery Family AT1G21690 24.342 3.26e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00034 - - gmx:100814391 2199.09