Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00031 ATGGAACTTTCGAGTCAAGAAGTAGAAATCCCAATCCCAATAAACAGCAGCACTACTTATGGTGGGGGACATGGTAATGGACATGGCCACGGTCTCATGATTCACCATGACCCTCCTCCACACCATAATAACCACATTATATCCTCAAACGGCACACCTACTATGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGATCATGGAACCTACAAGAAAGTGGTTCGGTACAGAGAATGCCTGAAGAACCATGCAGCAGCCATGGGAGGGAATGCCACTGACGGGTGTGGTGAGTTCATGCCAAGTGGAGAAGAAGGCACAATAGAGGCACTCAACTGCTCTGCCTGCCATTGCCACAGAAACTTCCACAGAAAAGAAGTGGAGGGAGAGCCCTCTTCATGTCATGACTACCACCACCCCAGTGCCTTCAACAGAAGAAGACTCATTCTAGGCCCTCACAAGAACCTCCTCCCTCCTGAGGCTCTGGGCTACCCTACAGCTGGTAACATCCTTCCTTCTAGAAGTGTCCCACCACACCAGATGATAATGCCCTACAACATTGGACACCTCCCTTCAGAGTCTGATGAACAGGAAGATGCTGGAATGCTGCAGCCTAGACCCTCCCAGCTAGTGAAGAAAAGGTTCAGGACAAAGTTCACTCAGGACCAGAAGGAGAAAATGCTCAACTTTGCTGAGAAGGTCGGCTGGAAAATCCAGAAGCAAGAGGAGTCTGTGGTGCAACAGTTCTGCCAAGAGATTGGGGTCAAGAGAAGAGTTCTCAAGGTTTGGATGCATAACAATAAGCACAATCTCGCCAAAAAGAATCCCCCCACTGCAGCACCTTAA 849 0.4994 MELSSQEVEIPIPINSSTTYGGGHGNGHGHGLMIHHDPPPHHNNHIISSNGTPTMQQQQQQQQQQQEDHGTYKKVVRYRECLKNHAAAMGGNATDGCGEFMPSGEEGTIEALNCSACHCHRNFHRKEVEGEPSSCHDYHHPSAFNRRRLILGPHKNLLPPEALGYPTAGNILPSRSVPPHQMIMPYNIGHLPSESDEQEDAGMLQPRPSQLVKKRFRTKFTQDQKEKMLNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNPPTAAP 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00031 282 MobiDBLite consensus disorder prediction 43 69 - -
Pumo4g00031 282 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 78 127 IPR006456 -
Pumo4g00031 282 FunFam Zinc-finger homeodomain protein 2 203 274 - -
Pumo4g00031 282 MobiDBLite consensus disorder prediction 1 70 - -
Pumo4g00031 282 NCBIfam homeobox domain, ZF-HD class 213 269 IPR006455 -
Pumo4g00031 282 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 57 272 - -
Pumo4g00031 282 MobiDBLite consensus disorder prediction 1 23 - -
Pumo4g00031 282 Pfam ZF-HD protein dimerisation region 76 128 IPR006456 -
Pumo4g00031 282 SUPERFAMILY Homeodomain-like 209 274 IPR009057 -
Pumo4g00031 282 Gene3D - 200 275 - -
Pumo4g00031 282 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 77 128 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00031 Pumo-Chr4 574606 576886 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00031 1 276 ZF-HD Transcription Factor Family AT1G14440 49.342 5.17e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pumo4g00031 ZF-HD_dimer 1.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00031 - - gmx:100805652 427.557