Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00016 ATGGCGCCGCTGATCCTGCATGCTGGGAAAACAAACAAAAATTCTTACAAGACACTCATTGCGGCAGAGTACGCTGGGGTTGAAGTTGAATTTGCCCCGAATTTTGAGATGGGTGTCTCCAATAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGCAAGGTTCCTGTGTTGGAAACACCCGATGGTCCAGTATTTGAGAGCAATGCCATTGCTCGCTATGTTACCCGGCTGAAGGGTGATAACACTTTGTATGGATCTTCTTTGATTGAATATGCCCACATTGAACAATGGATTGATTTTTCGTCATTGGAGATTGATGCTAATATTATCAAGTGGTATGCCCCAAGAGTTGGACGAGCACCATACCTTCCTCCAGCTGAGGAGGCTGCAATTTCTGCACTAAAGAGAGCTTTGGGTGCTCTGAACACTCACCTTGCTTCCAATACTTACCTGGTTGGGCATTCTGTGACCCTGGCTGACATCATAATGACATGCAATTTGTATTTGGGTTTCGCAAACATCCTGGTTAAGAGCTTTACCTCTGAGTTTCCTCATGTTGAGAGATACTTTTGGACCTTGGTCAATCAGCCAAACTTCCGAAAGATAATTGGGCAGGTCAAGCAGGCTGAAACTATTCCTCCTGTTCAATCTGCAAAGAAGCCTTCCCAGCCAAAAGAATCCAAGCCCAAGGTAAAAGATGAACCAAAGAAAGAGGCTAAGAAAGAGGCCAACAAGGAGCCAGAAAAGCCCAAAGAAGAAGCAGAAGAGGAGGCACCCAAGCCCAAACCTAAGAATCCCCTTGATCTTCTCCCTCCAAGTCCGATGATATTGGATGAGTGGAAAAGACTCTACTCAAACACTAAAACCAACTTCAGGGAGGTTGCTATCAAAGGATTTTGGGACATGTATGATCCCGAGGGATACTCTCTATGGTTTTGTGATTACAAATACAATGATGAGAATACTGTTTCTTTTGTGACATTGAACAAGGTTAGTGGATTTCTTCAGCGGATGGATTTGGCTCGCAAGTATGCATTTGGAAAAATGCTTGTGATTGGATCAGATCCACCATTTAAGGTGAAGGGGCTGTGGCTTTTTCGTGGGCAAGAAATCCCTCAATTTGTGATTGATGAATGCTATGACATGGAGCTTTACGAATGGACCAAGGTTGACATATCTGATGAAGCTCAAAAGGAGCGTGTCAATCAGATGATTGAAGATTGTGAACCTTTTGAGGGCGAGGGTCTTCTGGATGCGAAGTGCTTCAAGTGA 1275 0.4392 MAPLILHAGKTNKNSYKTLIAAEYAGVEVEFAPNFEMGVSNKTPEFLKMNPIGKVPVLETPDGPVFESNAIARYVTRLKGDNTLYGSSLIEYAHIEQWIDFSSLEIDANIIKWYAPRVGRAPYLPPAEEAAISALKRALGALNTHLASNTYLVGHSVTLADIIMTCNLYLGFANILVKSFTSEFPHVERYFWTLVNQPNFRKIIGQVKQAETIPPVQSAKKPSQPKESKPKVKDEPKKEAKKEANKEPEKPKEEAEEEAPKPKPKNPLDLLPPSPMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLVIGSDPPFKVKGLWLFRGQEIPQFVIDECYDMELYEWTKVDISDEAQKERVNQMIEDCEPFEGEGLLDAKCFK 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00016 424 SUPERFAMILY Thioredoxin-like 1 86 IPR036249 -
Pumo4g00016 424 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 4 424 IPR044628 GO:0004364
Pumo4g00016 424 SUPERFAMILY GST C-terminal domain-like 74 215 IPR036282 -
Pumo4g00016 424 SFLD Glutathione Transferase (cytosolic) 6 191 IPR040079 -
Pumo4g00016 424 CDD GST_N_EF1Bgamma 6 78 - -
Pumo4g00016 424 Gene3D - 81 217 - -
Pumo4g00016 424 MobiDBLite consensus disorder prediction 224 264 - -
Pumo4g00016 424 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 264 424 IPR001662 GO:0003746|GO:0006414
Pumo4g00016 424 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 264 424 IPR036433 GO:0003746|GO:0006414
Pumo4g00016 424 MobiDBLite consensus disorder prediction 211 273 - -
Pumo4g00016 424 SMART EF1G_2 263 371 IPR001662 GO:0003746|GO:0006414
Pumo4g00016 424 CDD GST_C_EF1Bgamma_like 91 212 - -
Pumo4g00016 424 FunFam Elongation factor 1 gamma 81 217 - -
Pumo4g00016 424 SFLD Main (cytGST) 6 191 - -
Pumo4g00016 424 SUPERFAMILY eEF1-gamma domain 264 424 IPR036433 GO:0003746|GO:0006414
Pumo4g00016 424 Gene3D Glutaredoxin 1 75 - -
Pumo4g00016 424 Pfam Elongation factor 1 gamma, conserved domain 263 371 IPR001662 GO:0003746|GO:0006414
Pumo4g00016 424 Pfam Glutathione S-transferase, N-terminal domain 3 76 IPR004045 -
Pumo4g00016 424 FunFam Elongation factor 1B gamma 3 75 - -
Pumo4g00016 424 FunFam Elongation factor 1-gamma 1 264 424 - -
Pumo4g00016 424 Pfam Glutathione S-transferase, C-terminal domain 130 198 IPR004046 -
Pumo4g00016 424 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 216 IPR010987 -
Pumo4g00016 424 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 83 IPR004045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00016 Pumo-Chr4 425034 427796 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00016 4 424 Eukaryotic Initiation Factors Gene Family AT1G57720 74.584 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00016 K03233 - gmx:547637 746.888