Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03724 ATGGAAACAGCGCTCACTTGCTTCTTCTGTGCCTGTGGTAGAGTCCCTCCAACTGCAAGTGAGCACTTCCGTTGTAATAATGCTGCCTCCGGACACGTGCGTTTTTCTTTGCCCCCTTCATTTGGAAACCATAGGCTAATTCGAAACGCCACTAGAAGCAGCAGCATCACCACCAGTGAAACTAAGGTGGTTTCAACTAATGTCAAAAGTAGAAGAAGGAGAAGAAGGAGTAGTCAGACTCGGGAGGAGGTGGTAGAGGAGGGTATTGGTAGTATTCATGAGAACGGAGACCCTATTGGGAAGAAGGATCTTGGGAAGAGTGTGATGAGGTGGATTCGTGATAGCATGAGGGCGATGGCGTCTGATTTAGCTGCAGCGGAGTTACAGGGAGAGTTGGAGTTGTGGGAGCGCATGGGACCGGGTCTCACTTTTATTATGCAGGCACAGCCATATCTCAATGCGGTTCCTATGCCCATTGGCCTTGAGGGTCTCTGCTTGAAGGCCTGCACGCACTATCCCACTCTTTTCGACCATTTTCAGAGGGAGCTTCGCGAAGTTCTCCGAGACTTGCAGACTAAGTCCTTCATTCAGGACTGGCGTGACACCAAGTCTTGGAAACTGCTTAAGAACCTCGCCAATTCAGCTCAGCATAGGGCGGTTGTGAGAAAGATAACGCAACCCAAGAGTGTCCAAGGCGTTTTAGGAATGGACTTCGAAAAGGTCAAAGCAATACAGCACAGGATTGACGAATTCACCAACCACATGTCAGAACTACTCCGTATTGAAAGGGATGCTGAATTGGAGTTTACTCAGGAGGAATTGGATGCTGTTCCTAAACCAGATGATTCTTCTGATTCTTCAAAACCGATTGATTTCTTGGTTAGCCATAGCCAGCCTCAACAAGAACTCTGCGACACCATTTGTAATTTAAACGCCATCAGTACCTCTACAGGACTGGGGGGAATGCATTTGGTGTTATTCAAGGTTGAAGGGAACCACCGGTTACCACCTACCTCTCTTTCACCTGGAGACATGGTTTGTGTGAGAACATATGACAGCACGGGTGCAATTACAACTTCTTGCATACAAGGATTTGTGAACAGTTTTGGGGATGATGGCTATAGTATTACAGTTGCTTTAGAGTCACGCCATGGTGATCCTACATTCTCTAAACTATTTGGGAAGAGTGTGCGCATTGACCGTATTCAAGGACTGGCTGATACACTTACCTATGAGCGCAACTGTGAAGCTTTAATGCTGCTTCAGAAGAATGGTTTACGAAAGAAGAATCCTTCAATTTCTGTTGTTGCTACACTGTTTGGAGATGGGGAAGATGTTGCCTGGCTTGAGAAAAATCATTTGGCTGACTGGGAAGAAGAAAAATTGGATGGAAGATTAGGAAGTGAAACCTTTGATGATTCTCAGCGGAGAGCAATTGCAATGGGTTTGAATAAAAAGAGGCCTGTATTGGTTATCCAAGGCCCTCCTGGTACAGGCAAGACTGGTTTGCTCAAGCAACTTATAGTGTGTGCTGTTCAGCAAGGTGAAAGGGTTCTTGTTACAGCACCTACTAATGCAGCTGTTGATAACATGGTTGAAAAGCTTTCAAATGTCGGATTAAATATTGTGCGGGTTGGAAATCCAGCTCGTATATCAAAAACAGTGGGATCAAAGTCTTTGGAAGAAATTGTAAATGCTAAGCTTGCAAGTTTTCGAGAAGAGTATGAGAGGAAGAAGTCAGATCTAAGAAAAGATCTAAGACATTGTTTAAGGGATGATTCACTAGCTGCAGGCATACGCCAACTTCTGAAGCAGCTGGGAAGGTCACTGAAGAAAAAGGAAAAGCAGACCGTCATTGAAGTTCTATCTAGTGCTCAGGTTGTGCTTGCCACTAATACTGGAGCAGCTGACCCTATGATTCGAAGGCTAGATACTTTTGACTTGGTTGTCATAGATGAAGCTGGACAGGCAATTGAACCCTCTTGCTGGATTCCTATATTGCAGGGAAAGCGCTGTATTCTTGCTGGTGATCAATGCCAACTTGCTCCTGTCATATTATCTAGAAAGGCCTTAGAAGGTGGTCTTGGAATATCTCTACTGGAGAGAGCTGCAACTTTGCATGAAGGGATTCTCACCACTAGGTTAACAACACAATACCGTATGAATGATGCAATTGCTAGTTGGGCTTCAAAGGAGATGTATGGAGGATTGTTGAAGTCCTCTGAGACTGTCTTTACTCATCTTCTAGTAGACTCTCCTTTTGTTAAGCCTACTTGGATAACACAATGCCCACTGCTATTGCTAGATACTAGAATGCCATATGGAAGTCTGTCAGTTGGTTGCGAAGAGCATCTAGACCCGGCTGGAACAGGCTCGTTTTATAATGAAGGAGAAGCTGAGATAGTTTTGCAGCATGTCTTTTCCTTAATCTATGCTGGTGTTAGCCCAACTGCTATTGCAGTGCAATCCCCTTATGTTGCTCAAGTACAACTTTTGAGGGACAAGCTTGATGAATTTCCAGAAGCAGCAGGTACGGAGGTTGCGACCATTGACAGTTTCCAAGGTCGGGAAGCTGATGCAGTAATTTTATCCATGGTACGATCAAACACACTGGGAGCTGTTGGATTCCTCGGGGATAGCAGAAGAATCAATGTTGCCATCACAAGAGCACGCAAACATTTAGCTTTGGTCTGTGACAGCTCGACTATATGCCACAATACCTTCTTAGCAAGACTTCTGCGTCATATTAGACACTTTGGTAGGGTGAAGCATGCAGAACCAGGTAGTTTTGGAGGATATGGACTTGGGATGAATCCAATATTACCTTCCATTAATTAG 2838 0.4482 METALTCFFCACGRVPPTASEHFRCNNAASGHVRFSLPPSFGNHRLIRNATRSSSITTSETKVVSTNVKSRRRRRRSSQTREEVVEEGIGSIHENGDPIGKKDLGKSVMRWIRDSMRAMASDLAAAELQGELELWERMGPGLTFIMQAQPYLNAVPMPIGLEGLCLKACTHYPTLFDHFQRELREVLRDLQTKSFIQDWRDTKSWKLLKNLANSAQHRAVVRKITQPKSVQGVLGMDFEKVKAIQHRIDEFTNHMSELLRIERDAELEFTQEELDAVPKPDDSSDSSKPIDFLVSHSQPQQELCDTICNLNAISTSTGLGGMHLVLFKVEGNHRLPPTSLSPGDMVCVRTYDSTGAITTSCIQGFVNSFGDDGYSITVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLRKKNPSISVVATLFGDGEDVAWLEKNHLADWEEEKLDGRLGSETFDDSQRRAIAMGLNKKRPVLVIQGPPGTGKTGLLKQLIVCAVQQGERVLVTAPTNAAVDNMVEKLSNVGLNIVRVGNPARISKTVGSKSLEEIVNAKLASFREEYERKKSDLRKDLRHCLRDDSLAAGIRQLLKQLGRSLKKKEKQTVIEVLSSAQVVLATNTGAADPMIRRLDTFDLVVIDEAGQAIEPSCWIPILQGKRCILAGDQCQLAPVILSRKALEGGLGISLLERAATLHEGILTTRLTTQYRMNDAIASWASKEMYGGLLKSSETVFTHLLVDSPFVKPTWITQCPLLLLDTRMPYGSLSVGCEEHLDPAGTGSFYNEGEAEIVLQHVFSLIYAGVSPTAIAVQSPYVAQVQLLRDKLDEFPEAAGTEVATIDSFQGREADAVILSMVRSNTLGAVGFLGDSRRINVAITRARKHLALVCDSSTICHNTFLARLLRHIRHFGRVKHAEPGSFGGYGLGMNPILPSIN 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03724 945 Coils Coil 572 592 - -
Pumo3g03724 945 MobiDBLite consensus disorder prediction 77 100 - -
Pumo3g03724 945 CDD SF1_C_Upf1 721 917 IPR047187 -
Pumo3g03724 945 Gene3D - 274 405 - -
Pumo3g03724 945 Gene3D - 719 927 IPR027417 -
Pumo3g03724 945 FunFam DNA helicase A 719 927 - -
Pumo3g03724 945 SMART ultradead3 467 719 IPR014001 -
Pumo3g03724 945 Pfam AAA domain 697 900 IPR041679 -
Pumo3g03724 945 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 470 907 IPR027417 -
Pumo3g03724 945 Gene3D - 255 703 IPR027417 -
Pumo3g03724 945 Pfam AAA domain 471 687 IPR041677 GO:0004386
Pumo3g03724 945 SMART AAA_5 486 701 IPR003593 GO:0016887
Pumo3g03724 945 MobiDBLite consensus disorder prediction 52 100 - -
Pumo3g03724 945 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 123 928 - -
Pumo3g03724 945 CDD DEXXQc_SMUBP2 471 720 - -
Pumo3g03724 945 FunFam DNA-binding protein SMUBP-2 isoform X2 274 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03724 Pumo-Chr3 78747105 78758822 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03724 469 660 Core DNA Replication Machinery Family AT1G08840 25.773 1.51e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03724 - - gmx:100799347 1710.27