Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03718 ATGGATCGTTTTTTCCCTGAGAAACTTCTTGGTGAGATTTTCTGGGATGAACCTCTTTTGGCCACTGATCAAAGTGATTTAGTTCAGTATTCCCAAATTATTGAGGGTGAAGCTTCTCCCCCTGCAACTCAAAGTGCTTTCGTTCAATATAGAGACCTACCCAGAAGAATTAATTCTCCAAACGGGTCAAATTCCCAGATCATGAGTAAGAGAATGCTTGCGTTCTTGAGAAAAAGTTGGCCTGTAGAGAGAAATAACGTAGAAGAGAACGAGAGAGATCGTAGTTTCAGGCACATGATTAATGAAAGAATGAGGAGACAGAGGCAGAGGCAGTGTTGCTTGGCCCTGCATTCAATATTACCACAAGGAACCAAAACGGATAATAATTCTGTAATTCAAATGGCAGCCAAGGAGATTGTACGGCTACAAGGATGCAGAGAAGAGTTGCAAAGGAAAAATGTTGAGCTTGAAGCAAATCATGAAGGTGGGGGAAGTAAAGTTCAATATTTGAGAGTTCCACATCCTAAATCTGGAATTGATTCTATGGTTGAGACACTCAAATGCTTGAAAGACCAAGGAGTGGATACCAGAAGCATCAAATCAACTTTCTCCCCACACGAATTGTTTGCAGTGTTAGAGATAGAAACTGATGAGGTTGCAGATGCTGATGTGGAAAGGGCTACTTGGAGAACACATGATGAACTTGATTGGAAGCTTCGTTCGCATGCCCGGGAAGGTTCAAACAAAAAGCAAAAGACTGTACATGAAGCGTTAGACCAAAATTAG 786 0.4148 MDRFFPEKLLGEIFWDEPLLATDQSDLVQYSQIIEGEASPPATQSAFVQYRDLPRRINSPNGSNSQIMSKRMLAFLRKSWPVERNNVEENERDRSFRHMINERMRRQRQRQCCLALHSILPQGTKTDNNSVIQMAAKEIVRLQGCREELQRKNVELEANHEGGGSKVQYLRVPHPKSGIDSMVETLKCLKDQGVDTRSIKSTFSPHELFAVLEIETDEVADADVERATWRTHDELDWKLRSHAREGSNKKQKTVHEALDQN 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03718 261 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 36 258 IPR044658 -
Pumo3g03718 261 Gene3D - 83 159 IPR036638 GO:0046983
Pumo3g03718 261 Coils Coil 132 159 - -
Pumo3g03718 261 Pfam Helix-loop-helix DNA-binding domain 97 143 IPR011598 GO:0046983
Pumo3g03718 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 93 142 IPR011598 GO:0046983
Pumo3g03718 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 158 IPR036638 GO:0046983
Pumo3g03718 261 MobiDBLite consensus disorder prediction 241 261 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03718 1 216 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G43650 38.095 6.89e-37 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03718 - - gmx:100815874 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03718 3 78671148 78672723 Pumo3g03718 3 78671148 78672723 ECH