Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03711 ATGATGGAAAGCAGAGTGGTATTTGAGAATGATCTGAACCTCAAGGCAACAGAGCTAAGGTTGGGGTTGCCAGGGACAGAGGAAAAGGAGGAGAAAACAGTGCATGGTATTAGAAACAACAAGAGGCAAGTGCGTGAAACTTCTGAAGAGTCTGTTTCCATTTCCAAGGCCTCACATGACCAACATGTGGAGAGTGATGCAGCCCCTCCTGCCAAAGCAAAGATAGTGGGGTGGCCACCAATCAGATCATACAGGAAAAACAGCCTGCAGGAGGGTGAGGGGGATGGGATCTATGTGAAAGTGAGCATGGATGGAGCCCCTTACCTCAGAAAGATTGACTTGAAAGTCTATAGGGGCTATCCACAACTACTCAAAGCTTTAGAGACCATGTTCAAGTTGACCATAGGTGAGTACTCTGAAAGAGAGGGTTACAAGGGCTCTGAATATGCACCTACATATGAAGACAAGGATGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGACATGTTTATGACTTCCTGCAAAAGGCTGAGAATCATGAAAGGCTCAGAAGCTAGAGGACTGGGTTGTGGTGTATGA 582 0.4674 MMESRVVFENDLNLKATELRLGLPGTEEKEEKTVHGIRNNKRQVRETSEESVSISKASHDQHVESDAAPPAKAKIVGWPPIRSYRKNSLQEGEGDGIYVKVSMDGAPYLRKIDLKVYRGYPQLLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFMTSCKRLRIMKGSEARGLGCGV 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03711 193 FunFam Auxin-responsive protein 91 193 - -
Pumo3g03711 193 MobiDBLite consensus disorder prediction 25 67 - -
Pumo3g03711 193 Pfam AUX/IAA family 40 190 IPR033389 -
Pumo3g03711 193 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 187 IPR003311 GO:0005634|GO:0006355
Pumo3g03711 193 Gene3D - 91 193 - -
Pumo3g03711 193 SUPERFAMILY CAD & PB1 domains 86 182 - -
Pumo3g03711 193 ProSiteProfiles PB1 domain profile. 96 183 IPR000270 GO:0005515
Pumo3g03711 193 MobiDBLite consensus disorder prediction 25 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03711 Pumo-Chr3 78559941 78561802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03711 99 189 B3 DNA Binding Superfamily AT2G46530 37.363 6.95e-12 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pumo3g03711 AUX_IAA 8e-53 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03711 K14484 - gmx:100800212 351.673