Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03699 ATGGTTGGATTGGAACTCATACCCATAGGTACAATATTGACTGTTCTAAGCAGCCAGGTTGTGAAAACAGCTAATGCAGCAATCGATGTTGTTATTGATAAAGAAAGTTTCAAGGTCCTTTCAAAACACTTGCTTGATATAGCACCAGTCCTAAAGGAATTACAGCTTCAGGAATTGAATGAGTCTCAAGCTGCAAGGGTTGCTCTGGAGTCCCTTGAATCAGATGTCAAAAAGGCGAATAATTTGGTTGAGAAGTACAGGAACCGTGGCCGCTTCTACCTGCTGGTGAGGTGCAGATACATAGTCAAGGAAGTTGAACAAGTCACAAGGGATATTGGAAGGTCTCTGGCTGCACTGTCCATTGCAAACACTGAAGTCCTATCAAGAATTGCTGATCAGGTTAACAGGTTACAGAATGAAATGCAAACGGTGGAGTTAGAGGCTTCACAATCTCAGCTTCAAATTGTTGACAAGTTGGACCATGGAATTAGGGAGCAAAAACTCGATCAGGCTTTTGCAAATGACATGCTTGAGGAAATAGCAAGGGCAGTTGGGGTGCCGGTGGAGCCTTTGGAGATAAGCAAAGAGCTAGACAGCATTAGGCAGGAAAGGGAAGAAGCAGCCACCAGGAAAGAAAGAGCTGAGTTTATTTTTTTGGAACAGATCATTGAGCTACTATCGCGAGCTGATGCTGCAAGGGATTATGAAGAAATTAAGAAGCAATACTTTAAAAGGGTTCGGGTAATAGAGAGATATAATTCAAGGGAAAAATATATTCCACCACTTAATTCTTTCCTTTGTCCCATAACTGAAGCTGTTATGGTAGATCCTGTCAGCCTTTGCACTGGTACTACATGTGAGAGGTCTGCCATTGAAGCTTGGTTTGATGATGGCAACAGGACTGACCCAGAAACAAAAGAGGTTCTTGAAGATACTACCTTGAGATCAAATGTTCGATTAAGAGAATCCATAGAAGAGTGGAGAGAAGTTAATTACTGCTTTGGAATAAGGTCTATCAGGGAAAGCCTTTTATTCAATTCTGACTTAATAGTGCAAGAATCTCTGAGCCAAATTCAGGCTCTCATAAGAGAGAATTCCATTAACAAGGATTGGATTTCTATAGGAGAGCTTACTGATATTATTATCTCTATCTTTGGGGAATCTGATTCCAGAGGTGTGAAGATGAAGATCTTGATTACTTTGAAGGATGCTGTAGAGGGGCATGCAAGAAACAAGGAAAAAGTGGTTGAATCTCAAGGTTGGTATCACATTATTTCCTGCTTAGGGAGTGACTCTAGAATTTCAAAGGAAGCAATTGATTTGCTATATGAGTTACTTCAAGACCGATCTGGTTGGAATAGAAGTTTCTGCAAAAAACTCTCTGAGCATCCCAGTGCAGTTTCTTACCTTGTTACTCTTCTAAAGGGTCCTGTAAGCGATTCGGCTGGGGTTTCAGAAAAGATTTTGATGGAGCTTTCTGAAATAGATGAGGAAAACATTTCAGCTGCTGCGAAGTTTGGCTGGTACAAACCGCTTATTGATCGCATGATTCAAGGATCGGAGTCTTCAAGAATGTCAATGGCAAAAGCCATAGTTAATTTCGAGTTGAAAGATTTGAATTTGAAACTCCTTGGCGAGCAAGGAGTTATACTTCCTTTGCTAGAAATGCTATCTGGCAGCATTGAATCTAAAGAACTGTCATTGTCAGCCCTGGTTAAACTAGCAAGATTCCATGCCAATAAGGGGATTATTGCAGAATCTGGAGGTGTGCCTCTTGTTTTAGATTTAATGTTCTCTCGCAGGATGCAGTCATTCATTACCATTAAATGTTGTGAAATTCTTGATAAGCTTGCTTCAGATGATGATGGAATTGATTTCTTTGTTGATGGAGAAGGGAAACAACTTGAGTTAGATAACATCATCACCAATTTGCTAGCTCTAATGCAGAGTCCGAACTCAGTTCACTACCGAAAGCCTGTATTACGTGCTCTTCTTGGCATTTGCAAGTTTGAGACTGGGTTAGTTAAGAAGGCAGTTCTGGCAGCCAATGGCGTATTTCTAATCCTCCCCCTTCTTGATGATTCTGACTCAGAAATCAGGGAAACTGCCATAAATCTTCTCTTTCTTTTCTCCCAACATGAACCAGAAGGAGTAGTTGAATACCTCTTCAGGCCAAGAAGACTAGAAGCTTTAGTTGGGTTTCTTGAGAATGATGACAATGATGATGTGCAAATGGCTGCTGCTGGTTTACTAGCCAACCTTCCAAAATCAGAACTAGAACTCACTATGAAGTTGATTGACTTGGGTGGCCTTGATGCAATCATAAGCATTTTAAAAAATGGTACAATGGAAGCAAAAGAAAATGCTCTCAGTGCCCTCTTCAGGTTCACAGACCCCACAAATATTGAGTCACAACGCGATTTGGTTAAACGAGGAATATATCCTTTGCTTGTAAATTTTCTCAACACCGGTTCAGTAACAGCAAAGGCAAGAGCAGCAGCATTCATTGGTGATCTTTCTATGAGCACTCCAAAGCTCACAGCTGTTTCTAAATCAACTGGTTGCACTCCTTGGTGGTGTTTTAGATCATCACAAATTCCTCTATGTTCAGCACATGAGAGTGTATGCAGTGTGAGTTCCACATTTTGTCTGTTGGAAGCAAATGCTTTGCCTGGCTTGATAAGGCTGTTACATGGGGAGCTTCATGCAACTGCTTATGAAGCTATACAGACTCTTTCCACATTGGTTTTGGAAGACTATCCCCAAAGGGGGGCTCGTGTGTTGCATGAGTCAAATGCAATGAGACCCTTATTGGAAATATTGAATTGGGGAACTGATTCTCTCAAGGCAGAAGCTCTAGGACTGTTGGAGAAGGTGTTTGTCTCAAAGGAAATGGTTGAATACTATGGAACAGCAGCAAGGTTACGTCTACTTGGTCTGACTGGCATGAATATATATGGGGATGGCCACCTAAGGAGGAAGGCTGCCAGGGTACTGTCATTGCTTGAACGCTATTCAAAGTCATCATCATCTGCAATCTCTGGAGTTCTGGAGTGA 3057 0.4148 MVGLELIPIGTILTVLSSQVVKTANAAIDVVIDKESFKVLSKHLLDIAPVLKELQLQELNESQAARVALESLESDVKKANNLVEKYRNRGRFYLLVRCRYIVKEVEQVTRDIGRSLAALSIANTEVLSRIADQVNRLQNEMQTVELEASQSQLQIVDKLDHGIREQKLDQAFANDMLEEIARAVGVPVEPLEISKELDSIRQEREEAATRKERAEFIFLEQIIELLSRADAARDYEEIKKQYFKRVRVIERYNSREKYIPPLNSFLCPITEAVMVDPVSLCTGTTCERSAIEAWFDDGNRTDPETKEVLEDTTLRSNVRLRESIEEWREVNYCFGIRSIRESLLFNSDLIVQESLSQIQALIRENSINKDWISIGELTDIIISIFGESDSRGVKMKILITLKDAVEGHARNKEKVVESQGWYHIISCLGSDSRISKEAIDLLYELLQDRSGWNRSFCKKLSEHPSAVSYLVTLLKGPVSDSAGVSEKILMELSEIDEENISAAAKFGWYKPLIDRMIQGSESSRMSMAKAIVNFELKDLNLKLLGEQGVILPLLEMLSGSIESKELSLSALVKLARFHANKGIIAESGGVPLVLDLMFSRRMQSFITIKCCEILDKLASDDDGIDFFVDGEGKQLELDNIITNLLALMQSPNSVHYRKPVLRALLGICKFETGLVKKAVLAANGVFLILPLLDDSDSEIRETAINLLFLFSQHEPEGVVEYLFRPRRLEALVGFLENDDNDDVQMAAAGLLANLPKSELELTMKLIDLGGLDAIISILKNGTMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLNTGSVTAKARAAAFIGDLSMSTPKLTAVSKSTGCTPWWCFRSSQIPLCSAHESVCSVSSTFCLLEANALPGLIRLLHGELHATAYEAIQTLSTLVLEDYPQRGARVLHESNAMRPLLEILNWGTDSLKAEALGLLEKVFVSKEMVEYYGTAARLRLLGLTGMNIYGDGHLRRKAARVLSLLERYSKSSSSAISGVLE 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03699 1018 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Pumo3g03699 1018 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Pumo3g03699 1018 SMART arm_5 577 619 IPR000225 GO:0005515
Pumo3g03699 1018 SMART arm_5 537 576 IPR000225 GO:0005515
Pumo3g03699 1018 SMART arm_5 408 447 IPR000225 GO:0005515
Pumo3g03699 1018 SMART arm_5 714 756 IPR000225 GO:0005515
Pumo3g03699 1018 SMART arm_5 801 841 IPR000225 GO:0005515
Pumo3g03699 1018 SMART arm_5 877 917 IPR000225 GO:0005515
Pumo3g03699 1018 SMART arm_5 921 961 IPR000225 GO:0005515
Pumo3g03699 1018 SMART arm_5 672 712 IPR000225 GO:0005515
Pumo3g03699 1018 SMART arm_5 757 798 IPR000225 GO:0005515
Pumo3g03699 1018 SUPERFAMILY ARM repeat 366 754 IPR016024 -
Pumo3g03699 1018 Gene3D - 336 537 IPR011989 -
Pumo3g03699 1018 Gene3D - 862 1014 IPR011989 -
Pumo3g03699 1018 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 333 IPR013083 -
Pumo3g03699 1018 Gene3D - 538 855 IPR011989 -
Pumo3g03699 1018 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1010 - -
Pumo3g03699 1018 Coils Coil 127 154 - -
Pumo3g03699 1018 Coils Coil 62 89 - -
Pumo3g03699 1018 SUPERFAMILY ARM repeat 642 1005 IPR016024 -
Pumo3g03699 1018 CDD RING-Ubox_PUB 265 314 IPR045210 -
Pumo3g03699 1018 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 726 754 IPR000225 GO:0005515
Pumo3g03699 1018 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Pumo3g03699 1018 Coils Coil 1016 1018 - -
Pumo3g03699 1018 SUPERFAMILY RING/U-box 248 331 - -
Pumo3g03699 1018 CDD MLKL_NTD 18 145 - -
Pumo3g03699 1018 Gene3D - 9 124 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03699 Pumo-Chr3 78339434 78344328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03699 69 978 U-box Gene Family AT1G68940 23.824 3.90e-45 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03699 - - gsj:114377374 1802.33